Moved from app-sci/generic-genome-browser to sci-biology/generic-genome-browser.

5 files changed, 114 insertions, 0 deletions

diff --git a/sci-biology/generic-genome-browser/ChangeLog b/sci-biology/generic-genome-browser/ChangeLog
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index 000000000000..cacb76da2ca7
--- /dev/null
+++ b/sci-biology/generic-genome-browser/ChangeLog
@@ -0,0 +1,21 @@
+# ChangeLog for app-sci/generic-genome-browser
+# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/ChangeLog,v 1.1 2004/12/23 22:23:31 ribosome Exp $
+
+*generic-genome-browser-1.58 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +generic-genome-browser-1.58.ebuild:
+  Moved from app-sci/generic-genome-browser to
+  sci-biology/generic-genome-browser.
+
+  03 Aug 2004; David Holm <dholm@gentoo.org>
+  generic-genome-browser-1.58.ebuild:
+  Added to ~ppc.
+
+*generic-genome-browser-1.58 (13 Jan 2004)
+
+  13 Jan 2004; Stephen Diener <sediener@gentoo.org>
+  generic-genome-browser-1.58.ebuild:
+  Initial import
+
diff --git a/sci-biology/generic-genome-browser/Manifest b/sci-biology/generic-genome-browser/Manifest
new file mode 100644
index 000000000000..9b09cd4805b9
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+++ b/sci-biology/generic-genome-browser/Manifest
@@ -0,0 +1,4 @@
+MD5 f8a929c7cd915f81c54fe8902eb31fb0 generic-genome-browser-1.58.ebuild 2045
+MD5 9a5801972704c2ae01eec3d579429ac4 ChangeLog 485
+MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
+MD5 a46a3f4a12816bb198f2f532a605ba11 files/digest-generic-genome-browser-1.58 80
diff --git a/sci-biology/generic-genome-browser/files/digest-generic-genome-browser-1.58 b/sci-biology/generic-genome-browser/files/digest-generic-genome-browser-1.58
new file mode 100644
index 000000000000..7226614fcc54
--- /dev/null
+++ b/sci-biology/generic-genome-browser/files/digest-generic-genome-browser-1.58
@@ -0,0 +1 @@
+MD5 582a53ef6906eea02ecdd7fa3065928e Generic-Genome-Browser-1.58.tar.gz 1207583
diff --git a/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild b/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild
new file mode 100644
index 000000000000..519d57b4c891
--- /dev/null
+++ b/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild
@@ -0,0 +1,82 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild,v 1.1 2004/12/23 22:23:31 ribosome Exp $
+
+inherit perl-module
+
+CATEGORY="app-sci"
+
+MY_PN="Generic-Genome-Browser"
+MY_P="${MY_PN}-${PV}"
+
+DESCRIPTION="The generic genome browser provides a display of genomic annotations on interactive web pages"
+HOMEPAGE="http://www.gmod.org"
+SRC_URI="mirror://sourceforge/gmod/${MY_P}.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~x86 ~ppc"
+IUSE="mysql gd"
+
+S="${WORKDIR}/${MY_P}"
+
+DEPEND="
+	>=sci-biology/bioperl-1.4
+	>=dev-perl/CGI-2.56
+	>=dev-perl/GD-2.07
+	dev-perl/DBI
+	dev-perl/Digest-MD5
+	dev-perl/Text-Shellwords
+	dev-perl/libwww-perl
+	dev-perl/XML-Parser
+	dev-perl/XML-Writer
+	dev-perl/XML-Twig
+	dev-perl/XML-DOM
+	dev-perl/Bio-Das
+	gd? (
+			dev-perl/GD-SVG
+		)
+	mysql?
+		(
+			>=dev-db/mysql-4
+			dev-perl/DBD-mysql
+		)
+	>=net-www/apache-2.0.47"
+
+RDEPEND="${DEPEND}"
+
+
+src_compile() {
+
+	cd ${S}
+#	ewarn "Modifying Makefile.PL to avoid sandbox violation"
+	sed -e "s:WriteMakefile(:WriteMakefile(\n 'PREFIX'=>'${D}/usr',\n'INSTALLDIRS'  => 'vendor',:" -i Makefile.PL
+
+	perl Makefile.PL \
+			HTDOCS=/var/www/localhost/htdocs \
+			CGIBIN=/var/www/localhost/cgi-bin \
+			CONF=/etc \
+			PREFIX=/var/www/localhost \
+			DESTDIR=${D} \
+			INSTALLDIRS=vendor
+	#perl-module_src_compile || die "Make failed"
+	perl-module_src_test || die "Test Failed"
+}
+
+src_install() {
+	dodir /etc
+	dodir /var/www/localhost/htdocs
+	dodir /var/www/localhost/cgi-bin
+	mydoc="History README TODO INSTALL"
+	dodir /usr/share/${PF}/tutorial
+	cd ${S}/docs/tutorial
+	tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
+	cd ${S}
+	sed -e "s:my \$dir = \":my \$dir = \"${D}/:" -i install_util/conf_install.PLS
+	sed -e "s:my \$ht_target = \":my \$ht_target = \"${D}/:" -i install_util/htdocs_install.PLS
+	sed -e "s:my \$cgi_target = :my \$cgi_target = \"${D}\"\.:" -i install_util/cgi_install.PLS
+
+	perl-module_src_install
+}
+
+
diff --git a/sci-biology/generic-genome-browser/metadata.xml b/sci-biology/generic-genome-browser/metadata.xml
new file mode 100644
index 000000000000..8a4bcd47220d
--- /dev/null
+++ b/sci-biology/generic-genome-browser/metadata.xml
@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer><email>sediener@gentoo.org</email></maintainer>
+</pkgmetadata>