Version Bump, #540692

(Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

3 files changed, 73 insertions, 1 deletions

diff --git a/sci-biology/seqan/ChangeLog b/sci-biology/seqan/ChangeLog
index 8061f95ad69e..deae422eb74f 100644
--- a/sci-biology/seqan/ChangeLog
+++ b/sci-biology/seqan/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/seqan
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/ChangeLog,v 1.8 2015/02/19 22:03:53 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/ChangeLog,v 1.9 2015/02/24 16:47:47 jlec Exp $
+
+*seqan-2.0.0 (24 Feb 2015)
+
+  24 Feb 2015; Justin Lecher <jlec@gentoo.org> +files/seqan-2.0.0-zlib.patch,
+  +seqan-2.0.0.ebuild:
+  Version Bump, #540692
 
   19 Feb 2015; Justin Lecher <jlec@gentoo.org> seqan-1.4.2.ebuild:
   Prefix love, #540690; thanks  Michael Schubert for the patch
diff --git a/sci-biology/seqan/files/seqan-2.0.0-zlib.patch b/sci-biology/seqan/files/seqan-2.0.0-zlib.patch
new file mode 100644
index 000000000000..de14e9d58b8e
--- /dev/null
+++ b/sci-biology/seqan/files/seqan-2.0.0-zlib.patch
@@ -0,0 +1,15 @@
+ include/seqan/stream/zipstream/zutil.h | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/include/seqan/stream/zipstream/zutil.h b/include/seqan/stream/zipstream/zutil.h
+index 2806344..f8b41e6 100644
+--- a/include/seqan/stream/zipstream/zutil.h
++++ b/include/seqan/stream/zipstream/zutil.h
+@@ -152,6 +152,7 @@ extern const char *z_errmsg[10]; /* indexed by 2-zlib_error */
+ 
+          /* functions */
+ 
++#define OF(x) x
+ #ifdef HAVE_STRERROR
+    extern char *strerror OF((int));
+ #  define zstrerror(errnum) strerror(errnum)
diff --git a/sci-biology/seqan/seqan-2.0.0.ebuild b/sci-biology/seqan/seqan-2.0.0.ebuild
new file mode 100644
index 000000000000..9ad67243c17f
--- /dev/null
+++ b/sci-biology/seqan/seqan-2.0.0.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/seqan-2.0.0.ebuild,v 1.1 2015/02/24 16:47:47 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit cmake-utils flag-o-matic python-single-r1
+
+DESCRIPTION="C++ Sequence Analysis Library"
+HOMEPAGE="http://www.seqan.de/"
+SRC_URI="http://packages.${PN}.de/${PN}-src/${PN}-src-${PV}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD GPL-3"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="cpu_flags_x86_sse4_1"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE} cpu_flags_x86_sse4_1"
+
+RDEPEND="${PYTHON_DEPS}
+	dev-libs/boost:=
+	sci-biology/samtools"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"/${PN}-${PN}-v${PV}
+
+PATCHES=(
+	"${FILESDIR}"/${P}-zlib.patch
+)
+
+src_prepare() {
+	rm -f \
+		util/cmake/FindZLIB.cmake \
+		|| die
+	cmake-utils_src_prepare
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DBoost_NO_BOOST_CMAKE=ON
+	)
+	cmake-utils_src_configure
+}
+
+src_install() {
+	mkdir -p "${BUILD_DIR}"/docs/html || die
+	cmake-utils_src_install
+	chmod 755 "${ED}"/usr/bin/*sh || die
+}