Version bump

(Portage version: 2.2_rc67/cvs/Linux x86_64)

2 files changed, 61 insertions, 2 deletions

diff --git a/sci-biology/velvet/ChangeLog b/sci-biology/velvet/ChangeLog
index c0d88b9d2399..83bfa5aea41b 100644
--- a/sci-biology/velvet/ChangeLog
+++ b/sci-biology/velvet/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/velvet
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.9 2009/10/31 17:57:32 maekke Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.10 2010/05/05 07:14:47 weaver Exp $
+
+*velvet-0.7.62 (05 May 2010)
+
+  05 May 2010; Andrey Kislyuk <weaver@gentoo.org> +velvet-0.7.62.ebuild:
+  Version bump
 
   31 Oct 2009; Markus Meier <maekke@gentoo.org> velvet-0.7.55.ebuild:
   amd64/x86 stable, bug #290936
diff --git a/sci-biology/velvet/velvet-0.7.62.ebuild b/sci-biology/velvet/velvet-0.7.62.ebuild
new file mode 100644
index 000000000000..71f6c0976e4e
--- /dev/null
+++ b/sci-biology/velvet/velvet-0.7.62.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild,v 1.1 2010/05/05 07:14:47 weaver Exp $
+
+EAPI="2"
+
+MY_P="${PN}_${PV}"
+
+DESCRIPTION="A sequence assembler for very short reads"
+HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
+SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="-doc"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="doc? ( virtual/latex-base )"
+RDEPEND=""
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	rm -rf "${S}"/third-party/zlib*
+	sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
+		-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
+		-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
+		-e '/obj:/ s/zlib//' -e '/obj_de:/ s/zlib//' \
+		"${S}"/Makefile || die
+	use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
+	sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
+}
+
+src_compile() {
+	MAKE_XOPTS=""
+	if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
+	if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
+	emake -j1 $MAKE_XOPTS || die
+	emake -j1 $MAKE_XOPTS color || die
+}
+
+src_install() {
+	dobin velvet{g,h,g_de,h_de} || die
+	insinto /usr/share/${PN}
+	doins -r contrib || die
+	dodoc Manual.pdf CREDITS.txt
+}
+
+pkg_postinst() {
+	elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual,"
+	elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your"
+	elog "environment or /etc/make.conf, then re-emerge the package. For example:"
+	elog "	VELVET_MAXKMERLENGTH=NN emerge [options] velvet"
+}