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authorJustin Lecher <jlec@gentoo.org>2014-01-06 12:00:45 +0000
committerJustin Lecher <jlec@gentoo.org>2014-01-06 12:00:45 +0000
commit365b1ca0a30cc05aa2734b2a5f2aca21c34e6b9c (patch)
tree31e7953c66ba61334044a2a76075f3f7c264b71c /sci-chemistry/aria
parentVersion bump, drop old (diff)
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sci-chemistry/aria: Drop old; punt base.eclass
(Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Diffstat (limited to 'sci-chemistry/aria')
-rw-r--r--sci-chemistry/aria/ChangeLog8
-rw-r--r--sci-chemistry/aria/aria-2.3.2-r4.ebuild88
-rw-r--r--sci-chemistry/aria/aria-2.3.2-r5.ebuild89
-rw-r--r--sci-chemistry/aria/aria-2.3.2_p20130826.ebuild6
4 files changed, 9 insertions, 182 deletions
diff --git a/sci-chemistry/aria/ChangeLog b/sci-chemistry/aria/ChangeLog
index bc0b8fc5cfd9..525718cb9554 100644
--- a/sci-chemistry/aria/ChangeLog
+++ b/sci-chemistry/aria/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-chemistry/aria
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.21 2013/10/09 14:36:29 jlec Exp $
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.22 2014/01/06 12:00:45 jlec Exp $
+
+ 06 Jan 2014; Justin Lecher <jlec@gentoo.org> -aria-2.3.2-r4.ebuild,
+ -aria-2.3.2-r5.ebuild, aria-2.3.2_p20130826.ebuild:
+ Drop old; punt base.eclass
*aria-2.3.2_p20130826 (09 Oct 2013)
diff --git a/sci-chemistry/aria/aria-2.3.2-r4.ebuild b/sci-chemistry/aria/aria-2.3.2-r4.ebuild
deleted file mode 100644
index 0501be72de86..000000000000
--- a/sci-chemistry/aria/aria-2.3.2-r4.ebuild
+++ /dev/null
@@ -1,88 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2-r4.ebuild,v 1.2 2013/01/17 20:24:41 jlec Exp $
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-PYTHON_USE_WITH="tk"
-
-inherit base eutils python versionator
-
-MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
-
-DESCRIPTION="Automated NOE assignment and NMR structure calculation"
-HOMEPAGE="http://aria.pasteur.fr/"
-SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2_latest.tar.gz"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-RDEPEND="
- sci-chemistry/clashlist
- sci-chemistry/procheck
- sci-libs/clashscore-db
- dev-python/numpy
- dev-python/matplotlib[tk]
- >=sci-chemistry/cns-1.2.1-r7[aria,openmp]
- dev-lang/tk
- >=sci-chemistry/ccpn-2.2
- dev-tcltk/tix"
-DEPEND="${RDEPEND}"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_nofetch(){
- einfo "Go to http://aria.pasteur.fr/archives/aria2.3.2.tar.gz/view, download ${A}"
- einfo "and place it in ${DISTDIR}"
-}
-
-src_test(){
- export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
- export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
- $(PYTHON) check.py || die
-}
-
-src_install(){
- insinto "$(python_get_sitedir)/${PN}"
- doins -r src aria2.py || die "failed to install ${PN}"
- insinto "$(python_get_sitedir)/${PN}"/cns
- doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
-
- if use examples; then
- insinto /usr/share/${P}/
- doins -r examples || die
- fi
-
- # ENV
- cat >> "${T}"/20aria <<- EOF
- ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
- EOF
-
- doenvd "${T}"/20aria
-
- # Launch Wrapper
- cat >> "${T}"/aria <<- EOF
- #!/bin/sh
- export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
- export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
- exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
- EOF
-
- dobin "${T}"/aria || die "failed to install wrapper"
- dosym aria /usr/bin/aria2
-
- dodoc README || die
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/aria/aria-2.3.2-r5.ebuild b/sci-chemistry/aria/aria-2.3.2-r5.ebuild
deleted file mode 100644
index cc9f21735a85..000000000000
--- a/sci-chemistry/aria/aria-2.3.2-r5.ebuild
+++ /dev/null
@@ -1,89 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2-r5.ebuild,v 1.2 2013/05/29 16:14:45 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-PYTHON_REQ_USE="tk"
-
-inherit base eutils python-single-r1 versionator
-
-MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
-DATE="03.25.2013"
-
-DESCRIPTION="Automated NOE assignment and NMR structure calculation"
-HOMEPAGE="http://aria.pasteur.fr/"
-SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2_${DATE}.tar.gz"
-
-SLOT="0"
-LICENSE="cns"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- ${PYTHON_DEPS}
- dev-tcltk/tix
- dev-lang/tk
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP},tk]
- >=sci-chemistry/cns-1.2.1-r7[aria,openmp]
- >=sci-chemistry/ccpn-2.2[${PYTHON_USEDEP}]
- sci-chemistry/clashlist
- sci-chemistry/procheck
- sci-libs/clashscore-db"
-DEPEND="${RDEPEND}"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_nofetch(){
- einfo "Go to http://aria.pasteur.fr/archives/aria2.3.2.tar.gz/view, download ${A}"
- einfo "and place it in ${DISTDIR}"
-}
-
-pkg_setup() {
- python-single-r1_pkg_setup
-}
-
-src_test(){
- export CCPNMR_TOP_DIR=$(python_get_sitedir)
- export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
- ${PYTHON} check.py || die
-}
-
-src_install(){
- python_moduleinto ${PN}
- python_domodule src aria2.py
- python_moduleinto ${PN}/cns
- python_domodule cns/{protocols,toppar,src/helplib}
-
- if use examples; then
- insinto /usr/share/${P}/
- doins -r examples
- fi
-
- # ENV
- cat >> "${T}"/20aria <<- EOF
- ARIA2="$(python_get_sitedir)/${PN}"
- EOF
-
- doenvd "${T}"/20aria
-
- # Launch Wrapper
- cat >> "${T}"/aria <<- EOF
- #!/bin/sh
- export CCPNMR_TOP_DIR="$(python_get_sitedir)"
- export PYTHONPATH="$(python_get_sitedir)/ccpn/python"
- exec "${PYTHON}" -O "\${ARIA2}"/aria2.py \$@
- EOF
-
- dobin "${T}"/aria
- dosym aria /usr/bin/aria2
-
- dodoc README
- python_optimize "${D}/$(python_get_sitedir)"
-}
diff --git a/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild b/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
index 774b575adf8a..acad8dba43ca 100644
--- a/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
+++ b/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild,v 1.1 2013/10/09 14:36:29 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild,v 1.2 2014/01/06 12:00:45 jlec Exp $
EAPI=5
PYTHON_COMPAT=( python{2_6,2_7} )
PYTHON_REQ_USE="tk"
-inherit base eutils python-single-r1 versionator
+inherit eutils python-single-r1 versionator
MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
DATE="08.26.2013"