diff options
| -rw-r--r-- | sci-biology/mira/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/mira/mira-3.0.0.ebuild | 51 | ||||
| -rw-r--r-- | sci-biology/mira/mira-3.2.0.ebuild (renamed from sci-biology/mira/mira-3.0.3.ebuild) | 8 |
3 files changed, 11 insertions, 56 deletions
diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog index a66ffc03fb6e..38ee796eebc2 100644 --- a/sci-biology/mira/ChangeLog +++ b/sci-biology/mira/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/mira # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.9 2010/06/28 21:32:20 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.10 2010/09/26 08:16:56 weaver Exp $ + +*mira-3.2.0 (26 Sep 2010) + + 26 Sep 2010; Andrey Kislyuk <weaver@gentoo.org> -mira-3.0.0.ebuild, + -mira-3.0.3.ebuild, +mira-3.2.0.ebuild: + Version bump, drop old 28 Jun 2010; Justin Lecher <jlec@gentoo.org> mira-3.0.0.ebuild, mira-3.0.3.ebuild, mira-3.0.5.ebuild: diff --git a/sci-biology/mira/mira-3.0.0.ebuild b/sci-biology/mira/mira-3.0.0.ebuild deleted file mode 100644 index 3e2c7b2a8e47..000000000000 --- a/sci-biology/mira/mira-3.0.0.ebuild +++ /dev/null @@ -1,51 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.0.ebuild,v 1.5 2010/06/28 21:32:20 jlec Exp $ - -EAPI="3" - -MIRA_3RDPARTY_PV="31-01-2010" - -inherit autotools base multilib - -DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" -HOMEPAGE="http://www.chevreux.org/projects_mira.html" -SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2 - mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2" - -LICENSE="GPL-2" -SLOT="0" -IUSE="doc" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos" - -CDEPEND=">=dev-libs/boost-1.35.0" -DEPEND="${CDEPEND} - dev-libs/expat - doc? ( >=app-text/texlive-core-2009 )" -RDEPEND="${CDEPEND}" - -src_prepare() { - find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die - epatch "${FILESDIR}"/${P}-asneeded.patch - AT_M4DIR="config/m4" eautoreconf -} - -src_configure() { - econf \ - --with-boost="${EPREFIX}"/usr/$(get_libdir) \ - --with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \ - --with-boost-thread=boost_thread-mt -} - -src_compile() { - base_src_compile - if use doc; then emake -C doc clean docs || die; fi -} - -src_install() { - einstall || die - dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL - find doc/docs/man -type f | xargs doman - find doc/docs/texinfo -type f | xargs doinfo - dobin "${WORKDIR}"/3rdparty/{sff_extract,*.pl} -} diff --git a/sci-biology/mira/mira-3.0.3.ebuild b/sci-biology/mira/mira-3.2.0.ebuild index e4c046f191e3..792894fb38f8 100644 --- a/sci-biology/mira/mira-3.0.3.ebuild +++ b/sci-biology/mira/mira-3.2.0.ebuild @@ -1,10 +1,10 @@ # Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.3.ebuild,v 1.2 2010/06/28 21:32:20 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.2.0.ebuild,v 1.1 2010/09/26 08:16:56 weaver Exp $ EAPI="3" -MIRA_3RDPARTY_PV="06-03-2010" +MIRA_3RDPARTY_PV="17-04-2010" inherit autotools base multilib @@ -18,7 +18,7 @@ SLOT="0" IUSE="doc" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos" -CDEPEND=">=dev-libs/boost-1.35.0" +CDEPEND=">=dev-libs/boost-1.41.0-r3" DEPEND="${CDEPEND} dev-libs/expat doc? ( >=app-text/texlive-core-2009 )" @@ -47,5 +47,5 @@ src_install() { dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL find doc/docs/man -type f | xargs doman find doc/docs/texinfo -type f | xargs doinfo - dobin "${WORKDIR}"/3rdparty/{sff_extract,*.pl} + dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl} } |