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* sci-biology/trf: Drop old; move to EAPI=4; use QA_PREBUILT, #436718Justin Lecher2012-10-061-6/+15
| | | | (Portage version: 2.2.0_alpha135/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/trf: Drop old; move to EAPI=4; use QA_PREBUILT, #436718Justin Lecher2012-10-063-47/+14
| | | | (Portage version: 2.2.0_alpha135/cvs/Linux x86_64)
* Version bump, remove oldAndrey Kislyuk2012-10-051-14/+10
| | | | (Portage version: 2.2.0_alpha134/cvs/Linux x86_64, signed Manifest commit with key 16E7D8E6)
* Version bump, remove oldAndrey Kislyuk2012-10-054-70/+12
| | | | (Portage version: 2.2.0_alpha134/cvs/Linux x86_64)
* Version bump, remove old, add git depAndrey Kislyuk2012-09-301-11/+9
| | | | (Portage version: 2.2.0_alpha134/cvs/Linux x86_64, signed Manifest commit with key 16E7D8E6)
* Version bump, remove old, add git depAndrey Kislyuk2012-09-303-47/+10
| | | | (Portage version: 2.2.0_alpha134/cvs/Linux x86_64)
* QA_DT_HASH (old/deprecated) -> QA_FLAGS_IGNORED (new hotness).Mike Frysinger2012-09-241-12/+22
| | | | (Portage version: 2.2.0_alpha131/cvs/Linux x86_64, signed Manifest commit with key FB7C4156)
* QA_DT_HASH (old/deprecated) -> QA_FLAGS_IGNORED (new hotness).Mike Frysinger2012-09-243-6/+10
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* Stable for amd64, wrt bug #430524Agostino Sarubbo2012-09-141-16/+6
| | | | (Portage version: 2.1.11.9/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #430524Agostino Sarubbo2012-09-142-5/+8
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* Stable for amd64, wrt bug #432366Agostino Sarubbo2012-09-141-13/+2
| | | | (Portage version: 2.1.11.9/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #432366Agostino Sarubbo2012-09-142-3/+6
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* sci-biology/seaview: Add missing deps, #432366Justin Lecher2012-09-141-7/+7
| | | | (Portage version: 2.2.0_alpha128/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/seaview: Add missing deps, #432366Justin Lecher2012-09-144-4/+14
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* sci-biology/allpaths: Respect CXXFLAGSJustin Lecher2012-08-301-5/+5
| | | | (Portage version: 2.2.0_alpha123/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpaths: Respect CXXFLAGSJustin Lecher2012-08-302-2/+13
| | | | (Portage version: 2.2.0_alpha123/cvs/Linux x86_64)
* sci-biology/allpaths: Fix for gcc-4.7Justin Lecher2012-08-301-9/+21
| | | | (Portage version: 2.2.0_alpha123/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpaths: Fix for gcc-4.7Justin Lecher2012-08-303-17/+137
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* sci-biology/meme: Version Bump; respect CFLAGS, #430774Justin Lecher2012-08-261-16/+20
| | | | (Portage version: 2.2.0_alpha122/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Version Bump; respect CFLAGS, #430774Justin Lecher2012-08-263-2/+221
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* sci-biology/seaview: Version Bump; Drop overlinking, #431074Justin Lecher2012-08-261-10/+10
| | | | (Portage version: 2.2.0_alpha122/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/seaview: Version Bump; Drop overlinking, #431074Justin Lecher2012-08-264-33/+62
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* sci-biology/recon: Respect CFLAGS and CC, #432660Justin Lecher2012-08-261-10/+13
| | | | (Portage version: 2.2.0_alpha122/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/recon: Respect CFLAGS and CC, #432660Justin Lecher2012-08-263-2/+71
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* sci-biology/arb: Version BUmp; add fix for gcc-4.7, #431228Justin Lecher2012-08-141-17/+22
| | | | (Portage version: 2.2.0_alpha121/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/arb: Version BUmp; add fix for gcc-4.7, #431228Justin Lecher2012-08-144-5/+107
| | | | (Portage version: 2.2.0_alpha121/cvs/Linux x86_64)
* sci-biology/mothur: Version BUmp; fix for buffer overflows, #431258Justin Lecher2012-08-141-12/+19
| | | | (Portage version: 2.2.0_alpha121/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/mothur: Version BUmp; fix for buffer overflows, #431258Justin Lecher2012-08-148-13/+340
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* sci-biology/uchime: New additionJustin Lecher2012-08-141-2/+13
| | | | (Portage version: 2.2.0_alpha121/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/uchime: New additionJustin Lecher2012-08-145-0/+65
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* sci-biology/rnaview: Respect CFLAGS, #429536; Bump to EAPI=4Justin Lecher2012-08-031-7/+19
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/rnaview: Respect CFLAGS, #429536; Bump to EAPI=4Justin Lecher2012-08-033-36/+93
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
* sci-biology/tree-puzzle: Mask stupid test, which fails due to precision ↵Justin Lecher2012-08-011-8/+9
| | | | | | reached depending on optimization used at compile time, #297646; fix move to EAPI=4, #429354 (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/tree-puzzle: Mask stupid test, which fails due to precision ↵Justin Lecher2012-08-013-3/+30
| | | | | | reached depending on optimization used at compile time, #297646; fix move to EAPI=4, #429354 (Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
* sci-biology/finchtv: Use QA_PREBUILT for binary packagesJustin Lecher2012-07-241-9/+10
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/finchtv: Use QA_PREBUILT for binary packagesJustin Lecher2012-07-243-11/+16
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* Remove packagePacho Ramos2012-07-214-118/+0
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* sci-biology/primer3: Version BUmpJustin Lecher2012-07-191-9/+22
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/primer3: Version BUmpJustin Lecher2012-07-193-10/+62
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* sci-biology/tophat: Version BUmp; do parallel builds; handle debug buildJustin Lecher2012-07-191-12/+16
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/tophat: Version BUmp; do parallel builds; handle debug buildJustin Lecher2012-07-195-14/+174
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* sci-biology/vcftools: Version BUmp, fix build systemJustin Lecher2012-07-191-9/+13
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/vcftools: Version BUmp, fix build systemJustin Lecher2012-07-193-1/+104
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* sci-biology/goby-cpp: Version Bump, handle static-libsJustin Lecher2012-07-191-11/+14
| | | | (Portage version: 2.2.0_alpha120/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/goby-cpp: Version Bump, handle static-libsJustin Lecher2012-07-192-1/+38
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* Fix broken Manifest entry for infernal-1.0.2-perl-5.16.patch.Zac Medico2012-07-161-5/+4
| | | | (Portage version: 2.2.0_alpha118/cvs/Linux i686, signed Manifest commit with key 0xAE5719A3)
* sci-biology/infernal: Cleaned oldJustin Lecher2012-07-151-5/+4
| | | | (Portage version: 2.2.0_alpha118/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/infernal: Cleaned oldJustin Lecher2012-07-152-31/+4
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* sci-biology/infernal: Fix cvs updates of commiter names in patches, #426588Justin Lecher2012-07-151-13/+13
| | | | (Portage version: 2.2.0_alpha118/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/infernal: Fix cvs updates of commiter names in patches, #426588Justin Lecher2012-07-152-8/+16
| | | | (Portage version: 2.2.0_alpha118/cvs/Linux x86_64)