From 124ee8a855f50252e234b33b0cb51e29cd473b79 Mon Sep 17 00:00:00 2001 From: Justin Lecher Date: Wed, 17 Jul 2013 07:32:04 +0000 Subject: sci-biology/abyss: Moved to autotools-utils.eclass (Portage version: 2.2.0_alpha188/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!) --- sci-biology/abyss/ChangeLog | 5 ++++- sci-biology/abyss/abyss-1.3.4.ebuild | 21 +++++++++++++-------- 2 files changed, 17 insertions(+), 9 deletions(-) (limited to 'sci-biology') diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog index 6f918fa498eb..89db16567a20 100644 --- a/sci-biology/abyss/ChangeLog +++ b/sci-biology/abyss/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/abyss # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.14 2013/03/11 14:35:27 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.15 2013/07/17 07:32:04 jlec Exp $ + + 17 Jul 2013; Justin Lecher abyss-1.3.4.ebuild: + Moved to autotools-utils.eclass 11 Mar 2013; Justin Lecher metadata.xml: Drop Andrey as maintainer so that bugs get assigned to sci-biology directly diff --git a/sci-biology/abyss/abyss-1.3.4.ebuild b/sci-biology/abyss/abyss-1.3.4.ebuild index 6ce67798ca99..3e8e7fa36f4e 100644 --- a/sci-biology/abyss/abyss-1.3.4.ebuild +++ b/sci-biology/abyss/abyss-1.3.4.ebuild @@ -1,10 +1,12 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.4.ebuild,v 1.1 2012/06/20 20:48:56 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.4.ebuild,v 1.2 2013/07/17 07:32:04 jlec Exp $ -EAPI="4" +EAPI=5 -inherit autotools eutils +AUTOTOOLS_AUTORECONF=true + +inherit autotools-utils DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" @@ -23,15 +25,18 @@ RDEPEND="${DEPEND}" # todo: --enable-maxk=N configure option # todo: fix automagic mpi toggling +PATCHES=( "${FILESDIR}"/${P}-gcc-4.7.patch ) + src_prepare() { - epatch "${FILESDIR}"/${P}-gcc-4.7.patch sed -i -e "s/-Werror//" configure.ac || die #365195 sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die - eautoreconf + autotools-utils_src_prepare } src_configure() { - econf \ - --docdir="${EPREFIX}/usr/share/doc/${PF}" \ + local myeconfargs=( + --docdir="${EPREFIX}/usr/share/doc/${PF}" $(use_enable openmp) + ) + autotools-utils_src_configure } -- cgit v1.2.3-65-gdbad