# Copyright 1999-2006 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.7 2006/04/06 22:00:07 tcort Exp $

inherit eutils toolchain-funcs

DESCRIPTION="Intelligent algorithms for DNA searches"
LICENSE="BSD"
HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}2/${PN}${PV}.tar.gz"

SLOT="0"
IUSE=""
KEYWORDS="~alpha ia64 ~sparc x86"

RDEPEND="=sci-biology/hmmer-2.3.2-r1"

DEPEND="${RDEPEND}
	app-shells/tcsh
	dev-lang/perl
	virtual/tetex"

S="${WORKDIR}/${PN}${PV}"

src_unpack() {
	unpack ${A}
	cd "${S}"/src
#	if use threads; then
#		append-flags "-DPTHREAD"
#		sed -e "s/#EXTRALIBS = -lpthread/EXTRALIBS = -lpthread/" -i makefile || die
#	fi
	sed -e "s/CC = cc/CC = $(tc-getCC)/" \
		-e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \
		-i makefile || die
	cd "${S}"/docs
	cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex
	cat wise2api.tex temp.tex apiend.tex > api.tex
	epatch "${FILESDIR}"/${PN}-api.tex.patch
}

src_compile() {
	cd src
	make all || die
	cd "${S}"/docs
	for i in api appendix dynamite wise2 wise3arch; do
		latex ${i} || die
		latex ${i} || die
		dvips ${i}.dvi -o || die
	done
}

src_install() {
	dobin "${S}"/src/bin/*
	dolib "${S}"/src/base/libwisebase.a
	dolib "${S}"/src/dynlibsrc/libdyna.a
	dobin "${S}"/src/dynlibsrc/testgendb
	dolib "${S}"/src/models/libmodel.a
	insinto /usr/share/${PN}
	doins -r "${S}"/wisecfg
	insinto /usr/share/doc/${PF}
	doins "${S}"/docs/*.ps
	newenvd "${FILESDIR}"/${PN}-env 24wise
}

src_test() {
	cd "${S}"/src
	WISECONFIGDIR="${S}/wisecfg" make test || die
}