# ChangeLog for sci-chemistry/apbs # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.79 2015/07/28 07:59:11 jlec Exp $ 28 Jul 2015; Justin Lecher -apbs-1.2.1b-r4.ebuild, -files/apbs-1.2.0-contrib.patch, -files/apbs-1.2.0-link.patch, -files/apbs-1.2.1b-autoconf-2.64.patch, -files/apbs-1.2.1b-install-fix.patch, -files/apbs-1.2.1b-multilib.patch, -files/apbs-1.2.1b-openmp.patch, -files/apbs-1.2.1b-parallelbuild.patch, -files/apbs-1.2.1b-shared.patch, -files/apbs-1.3-blas.patch, -files/apbs-1.3-contrib.patch, -files/apbs-1.3-link.patch, -files/apbs-1.3-mainroutines.patch, -files/apbs-1.3-openmp.patch, -files/apbs-1.3-python.patch, -files/apbs-1.3-shared.patch, -files/apbs-1.3-zlib.patch, -files/apbs-1.3/0001-autoconf-2.68.patch, -files/apbs-1.3/0002-python-linking.patch, -files/apbs-1.3/0003-apbs-1.3-pkg-config-file.patch, -files/apbs-1.3/0004-apbs-1.3-system-zlib.patch, -files/apbs-1.3/0005-apbs-1.3-linking.patch, -files/apbs-1.3/0006-apbs-1.3-clean-targets.patch, -files/apbs-1.3/0007-apbs-1.3-configure.patch, -files/apbs-1.3/0008-apbs-1.3-broken-test.patch, -files/apbs-1.3/0009-apbs-1.3-use-pkg-config-for-zlib-detection.patch, -files/apbs-1.3/0010-apbs-1.3-use-OPENMP_CFLAGS-instead-of-OPENMP_LIBS.patch, -files/apbs-1.3/0011-apbs-1.3-shared-linking.patch, -files/apbs-1.3/0012-apbs-1.3-python-linking-correction.patch, -files/apbs-1.3/0013-apbs-1.3-tools-installation.patch, -files/apbs-1.3/0014-apbs-1.3-pythonlib-fix.patch, -files/apbs-1.3/0015-apbs-1.3-pythonlib-fix.patch, -files/apbs-1.3/0016-apbs-1.3-apbs.pc-in-AC_CONFIG_FILES.patch: Drop old 04 Jul 2015; Mikle Kolyada apbs-1.4.1-r2.ebuild: amd64 stable wrt bug #534692 08 May 2015; Pacho Ramos apbs-1.4.1-r2.ebuild: ppc stable, bug #534692 08 May 2015; Justin Lecher apbs-1.4.1-r2.ebuild, metadata.xml: Add iapbs USE to correctly trigger project internal dependencies 08 May 2015; Justin Lecher apbs-1.4.1-r2.ebuild: Disable iAPBS to fix compilation problems, bug #547816 26 Apr 2015; Pacho Ramos apbs-1.4.1-r2.ebuild: x86 stable wrt bug #534692 22 Jan 2015; Justin Lecher -apbs-1.3-r3.ebuild, -apbs-1.4.1-r1.ebuild: Drop old 04 Jan 2015; Justin Lecher apbs-1.4.1-r2.ebuild: Make test use newly build libs *apbs-1.4.1-r2 (30 Oct 2014) 30 Oct 2014; Justin Lecher +apbs-1.4.1-r2.ebuild: Remove redundant python dir after installation 30 Oct 2014; Justin Lecher apbs-1.4.1-r1.ebuild: Fix build problems, #527344 *apbs-1.4.1-r1 (28 Oct 2014) 28 Oct 2014; Justin Lecher -apbs-1.4.1.ebuild, +apbs-1.4.1-r1.ebuild, files/apbs-1.4.1-manip.patch, +files/apbs-1.4.1-python.patch: Link python libs completely 24 Oct 2014; Justin Lecher apbs-1.4.1.ebuild: Add missing requiered use 24 Oct 2014; Justin Lecher apbs-1.4.1.ebuild: Add workaround for parallel build issue, #526210 21 Aug 2014; Justin Lecher apbs-1.4.1.ebuild, +files/apbs-1.4.1-manip.patch, files/apbs-1.4.1-multilib.patch: Fix build failure with USE=tools, #520126 *apbs-1.4.1 (15 Aug 2014) 15 Aug 2014; Justin Lecher +apbs-1.4.1.ebuild, +files/apbs-1.4.1-multilib.patch, metadata.xml: Version Bump 02 May 2013; Justin Lecher apbs-1.3-r3.ebuild: Fix obsolete macros in automake-1.13 23 Apr 2013; Justin Lecher apbs-1.2.1b-r4.ebuild, apbs-1.3-r3.ebuild: Fix HOMEPAGE 27 Feb 2013; Justin Lecher apbs-1.2.1b-r4.ebuild, apbs-1.3-r3.ebuild: Add missing dep on virtual/pkgconfig 19 Feb 2013; Justin Lecher apbs-1.2.1b-r4.ebuild, metadata.xml: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config 19 Oct 2012; Justin Lecher apbs-1.2.1b-r4.ebuild, -apbs-1.3.ebuild, -apbs-1.3-r1.ebuild, -apbs-1.3-r2.ebuild, apbs-1.3-r3.ebuild: Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the updated fortran-2.eclass *apbs-1.3-r3 (19 Jul 2012) 19 Jul 2012; Justin Lecher +apbs-1.3-r3.ebuild, +files/apbs-1.3/0016-apbs-1.3-apbs.pc-in-AC_CONFIG_FILES.patch: Fix patching problem which lead to an empty pkg-config file, #425294 25 Apr 2012; Justin Lecher apbs-1.3-r2.ebuild: Don't run libtoolize twice 05 Jan 2012; Justin Lecher apbs-1.3-r1.ebuild, apbs-1.3-r2.ebuild: Fix for file collitions *apbs-1.3-r2 (04 Jan 2012) 04 Jan 2012; Justin Lecher +apbs-1.3-r2.ebuild, +files/apbs-1.3/0001-autoconf-2.68.patch, +files/apbs-1.3/0002-python-linking.patch, +files/apbs-1.3/0003-apbs-1.3-pkg-config-file.patch, +files/apbs-1.3/0004-apbs-1.3-system-zlib.patch, +files/apbs-1.3/0005-apbs-1.3-linking.patch, +files/apbs-1.3/0006-apbs-1.3-clean-targets.patch, +files/apbs-1.3/0007-apbs-1.3-configure.patch, +files/apbs-1.3/0008-apbs-1.3-broken-test.patch, +files/apbs-1.3/0009-apbs-1.3-use-pkg-config-for-zlib-detection.patch, +files/apbs-1.3/0010-apbs-1.3-use-OPENMP_CFLAGS-instead-of-OPENMP_LIBS.patch, +files/apbs-1.3/0011-apbs-1.3-shared-linking.patch, +files/apbs-1.3/0012-apbs-1.3-python-linking-correction.patch, +files/apbs-1.3/0013-apbs-1.3-tools-installation.patch, +files/apbs-1.3/0014-apbs-1.3-pythonlib-fix.patch, +files/apbs-1.3/0015-apbs-1.3-pythonlib-fix.patch: Rewrite build, rely on pkg-config when possible, move to autotools-utils.eclass, handle static-libs correctly 13 Dec 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, apbs-1.3.ebuild, apbs-1.3-r1.ebuild: Block sci-libs/gts with USE=tools because of file collision on /usr/bin/smooth, #387689 20 Jul 2011; Pacho Ramos metadata.xml: Drop maintainer due retirement, bug #105599 07 Jul 2011; Justin Lecher apbs-1.3-r1.ebuild: Fix for atlas detection as blas implementation 04 Jul 2011; Justin Lecher apbs-1.3-r1.ebuild, +files/apbs-1.3-blas.patch: Fix for blas detection 02 Jul 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, apbs-1.3.ebuild, apbs-1.3-r1.ebuild, metadata.xml: Use pkg-config to detect mmdb and lapack libs 21 Jun 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, apbs-1.3.ebuild, apbs-1.3-r1.ebuild: Add dependency on virtual/fortran 21 Jun 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, apbs-1.3.ebuild, apbs-1.3-r1.ebuild: Added fortran-2.eclass support 16 Apr 2011; Justin Lecher apbs-1.3.ebuild, apbs-1.3-r1.ebuild: Moved to new meta ebuild sci-libs/fetk 16 Dec 2010; Justin Lecher apbs-1.2.1b-r4.ebuild, apbs-1.3.ebuild, apbs-1.3-r1.ebuild: Removal of fortran.eclass, #348851 *apbs-1.3-r1 (04 Nov 2010) 04 Nov 2010; Justin Lecher files/apbs-1.2.1b-multilib.patch, +apbs-1.3-r1.ebuild, +files/apbs-1.3-python.patch, files/apbs-1.3-shared.patch, +files/apbs-1.3-zlib.patch: Fix compilation of python module, fix support for zlib 01 Nov 2010; Justin Lecher apbs-1.3.ebuild, +files/apbs-1.3-mainroutines.patch, files/apbs-1.3-shared.patch, metadata.xml: Include support for FETK 31 Oct 2010; Justin Lecher apbs-1.3.ebuild: Make einfo on parallel python and mpi support *apbs-1.3 (27 Oct 2010) 27 Oct 2010; Justin Lecher apbs-1.2.1b-r4.ebuild, +apbs-1.3.ebuild, +files/apbs-1.3-contrib.patch, +files/apbs-1.3-link.patch, +files/apbs-1.3-openmp.patch, +files/apbs-1.3-shared.patch: Version Bump, tinker support removed 09 Jul 2010; Justin Lecher metadata.xml: Update metadata.xml 09 Jul 2010; Justin Lecher -apbs-1.0.0-r1.ebuild, -files/apbs-1.0.0-LDFLAGS.patch, -files/apbs-1.0.0-install-fix.patch, -files/apbs-1.0.0-libmaloc-noinstall.patch, -files/apbs-1.0.0-openmpi.patch, -apbs-1.2.1b-r3.ebuild: Cleaned old after stabilization 09 Jul 2010; Christian Faulhammer apbs-1.2.1b-r4.ebuild: stable x86, bug 324613 27 Jun 2010; Justin Lecher apbs-1.2.1b-r4.ebuild: Force LC_NUMERIC to C during test, should fix problem with decimal seperators 27 Jun 2010; apbs-1.2.1b-r4.ebuild: ppc stable #324613 26 Jun 2010; Christoph Mende apbs-1.2.1b-r4.ebuild: Stable on amd64 wrt bug #324613 22 Jun 2010; Justin Lecher apbs-1.2.1b-r3.ebuild, apbs-1.2.1b-r4.ebuild: Fixed test suite 17 Jun 2010; Justin Bronder apbs-1.0.0-r1.ebuild, apbs-1.2.1b-r3.ebuild, apbs-1.2.1b-r4.ebuild: Remove lam-mpi handling, see #324415. *apbs-1.2.1b-r4 (15 Jun 2010) 15 Jun 2010; Kacper Kowalik +apbs-1.2.1b-r4.ebuild, +files/apbs-1.2.1b-multilib.patch, files/apbs-1.2.1b-openmp.patch, +files/apbs-1.2.1b-parallelbuild.patch, +files/apbs-1.2.1b-shared.patch, metadata.xml: Adding shared libs, fix parallel build, fix install paths on multilib 09 Jun 2010; Justin Lecher -apbs-1.2.0.ebuild, -files/apbs-1.2.0-install-fix.patch, -apbs-1.2.1b.ebuild, -apbs-1.2.1b-r1.ebuild: removed old version which having problems with PYTHON ABIs stuff 12 May 2010; Justin Lecher (jlec) apbs-1.2.1b-r3.ebuild: Added missing fortran_pkg_setup *apbs-1.2.1b-r3 (26 Apr 2010) 26 Apr 2010; Justin Lecher -apbs-1.2.1b-r2.ebuild, +apbs-1.2.1b-r3.ebuild: Wrong usage of python_get_sitedir forces the rev bump 25 Apr 2010; Justin Lecher apbs-1.2.1b-r2.ebuild: Python ABI fixes, #316165 30 Mar 2010; Justin Lecher apbs-1.2.1b-r2.ebuild, metadata.xml: Fix for USE="python -tool" situation, #311995 *apbs-1.2.1b-r2 (28 Mar 2010) 28 Mar 2010; Justin Lecher (jlec) +apbs-1.2.1b-r2.ebuild, +files/apbs-1.2.1b-install-fix.patch, +files/apbs-1.2.1b-openmp.patch: Configure fixes, removed unnecessary installed files. Make tools optional *apbs-1.2.1b-r1 (20 Feb 2010) 20 Feb 2010; Justin Lecher (jlec) apbs-1.2.1b.ebuild, +apbs-1.2.1b-r1.ebuild: Reverted last change into a new revision 18 Feb 2010; Justin Lecher (jlec) apbs-1.2.1b.ebuild: EAPI=3, keyworded for {amd64,x86}-linux, made it EPREFIX aware *apbs-1.2.1b (04 Dec 2009) 04 Dec 2009; Markus Dittrich +apbs-1.2.1b.ebuild, +files/apbs-1.2.1b-autoconf-2.64.patch: Version bump and fixed compilation with autoconf 2.64 (fixes bug #294453 and #295537). *apbs-1.2.0 (03 Nov 2009) 03 Nov 2009; Markus Dittrich -apbs-0.5.0.ebuild, -apbs-0.5.1.ebuild, +apbs-1.2.0.ebuild, +files/apbs-1.2.0-contrib.patch, +files/apbs-1.2.0-install-fix.patch, +files/apbs-1.2.0-link.patch, -files/apbs-examples-gentoo.patch, -files/apbs-gcc4-gentoo.patch, metadata.xml: Version bump (fixes bug #262905) and removed old ebuilds. Currently missing is opal support (needs keywording by ppc) as well as fetk support. Thanks much to Justin Lecher for his ebuild. 06 May 2009; Markus Meier apbs-1.0.0-r1.ebuild: amd64/x86 stable, bug #250903 05 Feb 2009; Jeremy Olexa apbs-0.5.0.ebuild, apbs-0.5.1.ebuild, apbs-1.0.0-r1.ebuild: (non maintainer commit) [QA] fix HOMEPAGE, bug 256488 *apbs-1.0.0-r1 (11 Oct 2008) 11 Oct 2008; Markus Dittrich +files/apbs-1.0.0-LDFLAGS.patch, files/apbs-1.0.0-install-fix.patch, -apbs-1.0.0.ebuild, +apbs-1.0.0-r1.ebuild: Version bump to pull in updated patch fixing bad install location for docs (see bug #241316). Added patch for ignored LDFLAGS. *apbs-1.0.0 (29 Apr 2008) 29 Apr 2008; Markus Dittrich +files/apbs-1.0.0-install-fix.patch, +files/apbs-1.0.0-libmaloc-noinstall.patch, +files/apbs-1.0.0-openmpi.patch, +apbs-1.0.0.ebuild: Version bump (fixes bug #219599). Changed license to BSD since it most closely matches the apbs license. 23 Mar 2008; Markus Dittrich apbs-0.5.1.ebuild: Changed to unversioned install location in /usr/share (see bug #213616). 12 Jan 2008; Markus Dittrich apbs-0.5.1.ebuild: Fixed improper link path for libapbsblas.a (fixes bug #205310). 31 Jul 2007; Jeff Gardner -apbs-0.4.0.ebuild: Removing unused version/files. 18 Jul 2007; Jeff Gardner ChangeLog: Add apbs-0.5.1 which includes many bugfixes and new features. 24 Feb 2007; Jeff Gardner apbs-0.5.0.ebuild: Cleanup apbs-0.5.0.ebuild. *apbs-0.5.0 (23 Feb 2007) 23 Feb 2007; Jeff Gardner +apbs-0.5.0.ebuild: Add apbs-0.5.0 with Big Thanks(tm) to Stephen Floor. 06 Jan 2007; Danny van Dyk -apbs-0.3.2.ebuild: QA: Removed unused versions. 12 Oct 2006; Jeff Gardner ; apbs-0.4.0.ebuild: Keyword ~amd64 20 Sep 2006; Donnie Berkholz ; metadata.xml: (#148281) Change herd to sci-chemistry from sci. 16 Sep 2006; Donnie Berkholz ; apbs-0.4.0.ebuild: Keyword ~ppc. 07 Jul 2006; Donnie Berkholz ; ChangeLog: Update to my new email address. 31 May 2006; Donnie Berkholz ; apbs-0.4.0.ebuild: Fix crackrock SRC_URI, reported by Brian Harring. 23 May 2006; Markus Dittrich +files/apbs-gcc4-gentoo.patch, apbs-0.4.0.ebuild: Added patch to enable compilation with gcc-4.1. 27 Apr 2006; Alec Warner files/digest-apbs-0.3.2, Manifest: Fixing SHA256 digest, pass four *apbs-0.4.0 (08 Mar 2006) 08 Mar 2006; Markus Dittrich +apbs-0.4.0.ebuild, +apbs-examples-gentoo.patch: Version bump. Thanks to je_fro for the ebuild (see bug #124793). 13 Dec 2005; Markus Dittrich metadata.xml: marked apbs-0.3.2.ebuild as ~x86 *apbs-0.3.2 (20 Oct 2005) 20 Oct 2005; Olivier Fisette +metadata.xml, +apbs-0.3.2.ebuild: Initial import. Thanks to Markus Dittrich for his work.