# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p110113.ebuild,v 1.2 2011/01/17 12:46:51 jlec Exp $ EAPI="3" PYTHON_DEPEND="2:2.5" PYTHON_USE_WITH="ssl tk" inherit eutils portability python toolchain-funcs versionator PATCHSET="${PV##*_p}" MY_PN="${PN}mr" MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})" MY_MAJOR="$(get_version_component_range 1-3)" DESCRIPTION="The Collaborative Computing Project for NMR" SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz" [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2" HOMEPAGE="http://www.ccpn.ac.uk/ccpn" SLOT="0" LICENSE="|| ( CCPN LGPL-2.1 )" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="extendnmr +opengl" RDEPEND=" dev-lang/tk[threads] >=dev-python/numpy-1.4 >=dev-tcltk/tix-8.4.3 =sci-libs/ccpn-data-"${MY_MAJOR}"* x11-libs/libXext x11-libs/libX11 opengl? ( media-libs/freeglut dev-python/pyglet )" # We need to fix this # sci-chemistry/mdd DEPEND="${RDEPEND}" PDEPEND=" extendnmr? ( sci-chemistry/aria sci-chemistry/prodecomp )" RESTRICT="mirror" S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV}) pkg_setup() { python_set_active_version 2 } src_prepare() { [[ -n ${PATCHSET} ]] && \ epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch epatch "${FILESDIR}"/${MY_PV}-parallel.patch local tk_ver local myconf tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)" if use opengl; then GLUT_NEED_INIT="-DNEED_GLUT_INIT" IGNORE_GL_FLAG="" GL_FLAG="-DUSE_GL_FALSE" GL_DIR="${EPREFIX}/usr" GL_LIB="-lglut -lGLU -lGL" GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include" GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)" else IGNORE_GL_FLAG="-DIGNORE_GL" GL_FLAG="-DUSE_GL_FALSE" fi GLUT_NOT_IN_GL="" GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)" rm -rf data model doc license || die sed \ -e "s:/usr:${EPREFIX}/usr:g" \ -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \ -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \ -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \ -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \ -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \ -e "s:^\(GL_DIR =\).*:\1 ${GL_DIR}:g" \ -e "s:^\(GL_LIB =\).*:\1 ${GL_LIB}:g" \ -e "s:^\(GL_LIB_FLAGS =\).*:\1 ${GL_LIB_FLAGS}:g" \ -e "s:^\(GL_INCLUDE_FLAGS =\).*:\1 ${GL_INCLUDE_FLAGS}:g" \ -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \ -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \ -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I${EPREFIX}/$(python_get_includedir):g" \ -e "s:^\(PYTHON_LIB =\).*:\1 $(python_get_library -l):g" \ c/environment_default.txt > c/environment.txt } src_compile() { emake -C c all links } src_install() { local libdir local tkver local _wrapper find . -name "*.pyc" -type d -delete libdir=$(get_libdir) tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2) _wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara" use extendnmr && _wrapper="${_wrapper} extendNmr" for wrapper in ${_wrapper}; do sed \ -e "s:gentoo_sitedir:${EPREFIX}$(python_get_sitedir):g" \ -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \ -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \ -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \ -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \ -e "s://:/:g" \ "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}" dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}" done local in_path local files local pydocs pydocs="$(find python -name doc -type d)" rm -rf ${pydocs} || die in_path=$(python_get_sitedir)/${PN} for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do sed \ -e 's:#from __future__:from __future__:g' \ -i ${i} || die done insinto ${in_path} dodir ${in_path}/c ebegin "Installing main files" doins -r python || die "main files installation failed" eend dosym ../../../..//share/doc/ccpn-data-${MY_MAJOR}/html ${in_path}/doc || die for i in ${pydocs}; do dosym /usr/share/doc/ccpn-data-${MY_MAJOR}/html/${i} ${in_path}/${i} done dosym /usr/share/ccpn/data ${in_path}/data dosym /usr/share/ccpn/model ${in_path}/model einfo "Adjusting permissions" files=" cambridge/c/BayesPeakSeparator.so ccp/c/StructUtil.so ccp/c/StructStructure.so ccp/c/StructBond.so ccp/c/StructAtom.so ccpnmr/c/DyAtomCoord.so ccpnmr/c/DyDistConstraint.so ccpnmr/c/DyDistForce.so ccpnmr/c/AtomCoordList.so ccpnmr/c/DyAtomCoordList.so ccpnmr/c/ContourStyle.so ccpnmr/c/ContourLevels.so ccpnmr/c/SliceFile.so ccpnmr/c/PeakCluster.so ccpnmr/c/Dynamics.so ccpnmr/c/Bacus.so ccpnmr/c/Midge.so ccpnmr/c/DyDistConstraintList.so ccpnmr/c/WinPeakList.so ccpnmr/c/PeakList.so ccpnmr/c/DistConstraint.so ccpnmr/c/CloudUtil.so ccpnmr/c/DistForce.so ccpnmr/c/DistConstraintList.so ccpnmr/c/AtomCoord.so ccpnmr/c/DyDynamics.so ccpnmr/c/ContourFile.so memops/c/ShapeFile.so memops/c/BlockFile.so memops/c/PdfHandler.so memops/c/MemCache.so memops/c/FitMethod.so memops/c/PsHandler.so memops/c/GlHandler.so memops/c/StoreFile.so memops/c/StoreHandler.so memops/c/TkHandler.so" for FILE in ${files}; do fperms 755 ${in_path}/python/${FILE} done } pkg_postinst() { python_mod_optimize ${PN} } pkg_postrm() { python_mod_cleanup ${PN} }