blob: a267c7ebacbf9336eed5bf18b97a53225d68500a (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
# Copyright 1999-2003 Gentoo Technologies, Inc.
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl-pipeline/bioperl-pipeline-0.1.ebuild,v 1.1 2003/12/16 00:35:07 sediener Exp $
inherit perl-module
CATEGORY="app-sci"
DESCRIPTION="Collection of tools for bioinformatics, genomics and life science research : Biopipe "
HOMEPAGE="http://www.biopipe.org/"
SRC_URI="mirror://gentoo/$P.tar.gz"
LICENSE="Artistic GPL-2"
SLOT="0"
KEYWORDS="~x86"
IUSE=""
RDEPEND="
dev-db/mysql
>=app-sci/bioperl-1.2.3
>=app-sci/bioperl-run-1.2.2
dev-perl/XML-SimpleObject
dev-perl/XML-Parser
dev-perl/Data-ShowTable"
DEPEND="${RDEPEND}"
src_unpack() {
unpack ${A}
cd ${S}
}
src_compile() {
# there's a test to run for BioGFFDB if using mysql
perl-module_src_compile || die "compile failed"
# make test
## perl-module_src_test || die "src test failed"
# tests will fail unless mysq root user has no password
}
src_install() {
mydoc="AUTHORS README LICENSE INSTALL FAQ database_schema.doc database_tables.txt"
perl-module_src_install
# bioperl scripts and examples
einfo "Adding bioperl-pipeline scripts, sql and xml directories to /usr/share/${PF}..."
dodir /usr/share/${PF}/scripts
cd ${S}/scripts/
tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
dodir /usr/share/${PF}/sql
cd ${S}/sql/
tar cf - ./ | ( cd ${D}/usr/share/${PF}/sql; tar xf -)
dodir /usr/share/${PF}/xml
cd ${S}/xml/
tar cf - ./ | ( cd ${D}/usr/share/${PF}/xml; tar xf -)
dodir /usr/share/doc/${PF}/
cd ${S}/doc/
tar cf - ./ | ( cd ${D}/usr/share/doc/${PF}; tar xf -)
cd ${S}
}
|
GitWeb
