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# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/clustalx-1.83-r2.ebuild,v 1.9 2010/10/10 21:18:22 ulm Exp $
EAPI=1
inherit toolchain-funcs eutils
DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
HOMEPAGE="http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/"
SRC_URI="ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalX/clustalx1.83.sun.tar.gz"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="amd64 x86 ~sparc"
IUSE=""
DEPEND="sci-biology/clustalw:1
sci-biology/ncbi-tools
>=x11-libs/openmotif-2.3:0
x11-libs/libXpm"
S="${WORKDIR}/${PN}${PV}.sun"
pkg_setup() {
if ! built_with_use sci-biology/ncbi-tools X; then
echo
eerror "ClustalX requires the Vibrant toolkit, which is part of the"
eerror "optional X support in the \"sci-biology/ncbi-tools\" package."
eerror "To install ClustalX on your system, first recompile"
eerror "\"sci-biology/ncbi-tools\" with the \"X\" USE flag enabled,"
eerror "then try to install ClustalX again."
die "X support not enabled in \"sci-biology/ncbi-tools\""
fi
}
src_unpack() {
unpack ${A}
cd "${S}"
cp makefile.linux makefile
sed -e "s/CC = cc/CC = $(tc-getCC)/" \
-e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \
-e "s/LFLAGS = -O -lm/LFLAGS = -lm ${CFLAGS}/" \
-e "s%-I/usr/bio/src/ncbi/include%-I/usr/include/ncbi%" \
-e "s%-L/usr/bio/src/ncbi/lib -L/usr/ccs/lib -L/usr/X11R6/lib%-L/usr/lib -L/usr/X11R6/lib%" \
-i makefile || die
sed -i -e "s%clustalx_help%/usr/share/doc/${PF}/clustalx_help%" clustalx.c || die
sed -i -e "s%clustalw.doc%../clustalw.doc%" clustalx.html || die
}
src_compile() {
make || die
}
src_install() {
dobin clustalx
dodoc README_X
dohtml clustalx.html
insinto /usr/share/doc/${PF}
doins clustalx_help clustalw.doc
}
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