diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/tophat/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/tophat/tophat-1.0.12.ebuild | 38 |
2 files changed, 0 insertions, 39 deletions
diff --git a/sci-biology/tophat/Manifest b/sci-biology/tophat/Manifest index 2bf812108794..a0a9b791cf34 100644 --- a/sci-biology/tophat/Manifest +++ b/sci-biology/tophat/Manifest @@ -1,2 +1 @@ -DIST tophat-1.0.12.tar.gz 468781 SHA256 f67b3f89aa79c7e14b40bcdba87f5aba6d322f869ca4260503e64ffcd2b621b2 SHA512 275e14cb6fb5f7a0874adcf843aabfda6c6868f835faa2d03e6561646ca1fc80804fe1887c51a375125f2f5ed6242e304f97ff12774a7d676b4964614d4a5bf1 WHIRLPOOL ea62ce14aae28dc0cc2b18fde870a0d3c021d9fb0c2ffb728b02b008b5f5bd416f29176fe81ed2ad8b1a41014f8a7114e2b8032426e2767effe9cc6933417cee DIST tophat-2.1.1.tar.gz 2259554 SHA256 37840b96f3219630082b15642c47f5ef95d14f6ee99c06a369b08b3d05684da5 SHA512 e2e0943a6f3d34b83922e6e403b65a3bee480a2b2bb4bf2de0cae7e0ef5bb166b66fec923316c2b643e8550e43c842f0f1bcc2ca7249d20fbcf5a4733fbdeabc WHIRLPOOL 1e0d2bc4031eaa56a3b77ca5966c2ed439a85c9b05f028f69f4477d517e51371156bbe73d499536148eb42d60641af7f294641ee79bc855fcc4df74d70dae26c diff --git a/sci-biology/tophat/tophat-1.0.12.ebuild b/sci-biology/tophat/tophat-1.0.12.ebuild deleted file mode 100644 index 88870c93982b..000000000000 --- a/sci-biology/tophat/tophat-1.0.12.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI="2" - -inherit autotools - -DESCRIPTION="A fast splice junction mapper for RNA-Seq reads" -HOMEPAGE="http://tophat.cbcb.umd.edu/" -SRC_URI="http://tophat.cbcb.umd.edu/downloads/${P}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -IUSE="" -KEYWORDS="amd64 x86" - -DEPEND="" -RDEPEND="sci-biology/bowtie" - -src_prepare() { - # fix missing includes - sed -i '/#include <string>/ a #include <stdio.h>' "${S}/src/gff_juncs.cpp" || die - sed -i \ - -e '/#include <stdio.h>/ a #include <unistd.h>' \ - "${S}/src/prep_reads.cpp" \ - "${S}/src/extract_reads.cpp" || die - # fix parallel make race - sed -i -e 's/\$(top_builddir)\/src\///g' src/Makefile.am || die - # remove broken arch-dependent CFLAGS setting - perl -i -ne 'print unless /case "\${host_cpu}-\${host_os}" in/../^esac/' configure.ac || die - eautoreconf -} - -src_install() { - einstall || die - dodoc AUTHORS NEWS THANKS -} |