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path: root/sci-biology/tophat
Commit message (Collapse)AuthorAgeFilesLines
* sci-biology/*: Update Manifest hashesMichał Górny2017-12-101-1/+1
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* sci-biology/tophat: Unbundle python modulesDavid Seifert2017-04-012-11/+50
| | | | | Bug: https://bugs.gentoo.org/show_bug.cgi?id=614370 Package-Manager: Portage-2.3.5, Repoman-2.3.2
* Drop $Id$ per council decision in bug #611234.Robin H. Johnson2017-02-281-1/+0
| | | | Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
* sci-biology/tophat: Do not wrap scriptsDavid Seifert2016-10-031-2/+2
| | | | Package-Manager: portage-2.3.1
* sci-biology/tophat: Remove old and ancient 1.0 ebuildsDavid Seifert2016-09-272-39/+0
| | | | Package-Manager: portage-2.3.1
* sci-biology/tophat: USE="threads" dep on dev-libs/boostDavid Seifert2016-09-252-8/+61
| | | | | | | | Gentoo-bug: 594810 * Remove autoconf macros from archive, depend on sys-devel/autoconf instead for the latest versions. Package-Manager: portage-2.3.1
* sci-biology/tophat: Allow for compiling with GCC 6David Seifert2016-09-222-0/+15
| | | | | | Gentoo-bug: 594544 Package-Manager: portage-2.3.1
* sci-biology/tophat: Various QA fixes, handle python properlyDavid Seifert2016-09-031-4/+14
| | | | | | | | | | * Add subslot operator := for dev-libs/boost * DEPEND on virtual/pkgconfig * Add missing ${PYTHON_REQUIRED_USE} and ${PYTHON_DEPS} * Install python scripts and modules properly using 'python_doscript' and 'python_domodule' Package-Manager: portage-2.3.0
* sci-biology/tophat: Remove old and brokenDavid Seifert2016-04-0910-526/+0
| | | | Package-Manager: portage-2.2.28
* sci-biology/tophat: Version bump, use samtools:0.1-legacyDavid Seifert2016-04-093-0/+184
| | | | | | | | | Gentoo-Bug: 545154, 546816, 566494, 572054 * EAPI=6 * Unbundle samtools and SeqAn * Fix broken shebangs in python scripts Package-Manager: portage-2.2.28
* Set appropriate maintainer types in metadata.xml (GLEP 67)Michał Górny2016-01-241-1/+1
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* Replace all herds with appropriate projects (GLEP 67)Michał Górny2016-01-241-1/+4
| | | | | Replace all uses of herd with appropriate project maintainers, or no maintainers in case of herds requested to be disbanded.
* sci-biology/tophat: correct dependency on sci-biology/seqanSergey Popov2015-10-192-2/+2
| | | | | | Gentoo-Bug: 546816 Package-Manager: portage-2.2.20
* Update hashes in ManifestJustin Lecher2015-09-231-2/+2
| | | | | | Add missing SHA512 and WHIRLPOOL hashes Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Revert DOCTYPE SYSTEM https changes in metadata.xmlMike Gilbert2015-08-241-1/+1
| | | | | | | repoman does not yet accept the https version. This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450. Bug: https://bugs.gentoo.org/552720
* Use https by defaultJustin Lecher2015-08-241-1/+1
| | | | | | Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
* proj/gentoo: Initial commitRobin H. Johnson2015-08-0811-0/+570
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed