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* sci-biology/trnascan-se: drop 1.31David Seifert2022-07-092-80/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/trnascan-se: improve makefileDavid Seifert2022-07-093-20/+182
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/rebase: fix RDEPEND typoSam James2022-07-091-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-biology/biopandas: update EAPI 7 -> 8David Seifert2022-07-081-3/+3
| | | | | | Closes: https://bugs.gentoo.org/809665 Closes: https://bugs.gentoo.org/846218 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/bedtools: update EAPI 7 -> 8David Seifert2022-07-081-6/+5
| | | | | Closes: https://bugs.gentoo.org/846215 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/yass: update EAPI 6 -> 8David Seifert2022-07-071-3/+3
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/trf: update EAPI 6 -> 8David Seifert2022-07-071-8/+7
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/transfac: update EAPI 6 -> 8David Seifert2022-07-071-7/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/t-coffee: update EAPI 6 -> 8David Seifert2022-07-072-17/+29
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/rnaview: update EAPI 6 -> 8David Seifert2022-07-071-8/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/recon: update EAPI 6 -> 8David Seifert2022-07-072-8/+28
| | | | | Closes: https://bugs.gentoo.org/716082 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/prodigal: update EAPI 6 -> 8David Seifert2022-07-071-8/+3
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/prank: update EAPI 6 -> 8David Seifert2022-07-074-39/+57
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/piler: update EAPI 6 -> 8David Seifert2022-07-071-6/+3
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/pilercr: update EAPI 6 -> 8David Seifert2022-07-071-6/+4
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/phyml: update EAPI 6 -> 8David Seifert2022-07-071-8/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/phred: update EAPI 6 -> 8David Seifert2022-07-071-14/+10
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/pals: update EAPI 6 -> 8David Seifert2022-07-071-8/+3
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/mummer: update EAPI 6 -> 8David Seifert2022-07-071-6/+4
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/maqview: update EAPI 6 -> 8David Seifert2022-07-071-5/+3
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/maq: update EAPI 6 -> 8David Seifert2022-07-071-5/+4
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/kalign: update EAPI 6 -> 8David Seifert2022-07-073-33/+54
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/iqpnni: update EAPI 6 -> 8David Seifert2022-07-071-7/+4
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/iedera: update EAPI 6 -> 8David Seifert2022-07-072-9/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/hmmer: update EAPI 6 -> 8 (3.1_beta2)David Seifert2022-07-072-14/+41
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/hmmer: update EAPI 6 -> 8 (2.3.2)David Seifert2022-07-071-11/+16
| | | | | Closes: https://bugs.gentoo.org/725306 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/exonerate: update EAPI 6 -> 8David Seifert2022-07-074-29/+54
| | | | | Closes: https://bugs.gentoo.org/600766 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/eugene: update EAPI 6 -> 8David Seifert2022-07-073-31/+114
| | | | | Closes: https://bugs.gentoo.org/829816 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/embassy: update EAPI 6 -> 8David Seifert2022-07-071-2/+2
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/elph: update EAPI 6 -> 8David Seifert2022-07-071-7/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/dialign2: update EAPI 6 -> 8David Seifert2022-07-073-13/+222
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/clustalw: update EAPI 6 -> 8 (2.1)David Seifert2022-07-071-4/+3
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/clustalw: update EAPI 6 -> 8 (1.83)David Seifert2022-07-073-17/+48
| | | | | Closes: https://bugs.gentoo.org/741180 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/clustal-omega: update EAPI 6 -> 8David Seifert2022-07-071-10/+3
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/cd-hit: update EAPI 6 -> 8David Seifert2022-07-071-5/+4
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/blat: update EAPI 6 -> 8David Seifert2022-07-072-35/+173
| | | | | | | Closes: https://bugs.gentoo.org/730780 Closes: https://bugs.gentoo.org/730782 Closes: https://bugs.gentoo.org/731744 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/biosql: update EAPI 6 -> 8David Seifert2022-07-071-4/+4
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/biogrep: update EAPI 6 -> 8David Seifert2022-07-071-8/+8
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/amap: update EAPI 6 -> 8David Seifert2022-07-072-21/+21
| | | | | Closes: https://bugs.gentoo.org/725288 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/trnascan-se: update EAPI 6 -> 8Sam James2022-07-031-0/+53
| | | | | Closes: https://bugs.gentoo.org/710970 Signed-off-by: Sam James <sam@gentoo.org>
* sci-biology/vcftools: drop 0.1.14Sam James2022-07-023-90/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-biology/bioperl-db: update EAPI 6 -> 8David Seifert2022-07-021-13/+17
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/HTSeq: drop 0.12.4David Seifert2022-07-022-34/+0
| | | | | | Closes: https://bugs.gentoo.org/809662 Closes: https://bugs.gentoo.org/846221 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/HTSeq: sync live ebuildDavid Seifert2022-07-021-7/+42
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/HTSeq: add 2.0.2David Seifert2022-07-022-0/+69
| | | | | | Bug: https://bugs.gentoo.org/809662 Bug: https://bugs.gentoo.org/846221 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/mafft: drop 7.305David Seifert2022-06-253-78/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/aaindex: update EAPI 6 -> 8David Seifert2022-06-191-5/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/prints: update EAPI 6 -> 8David Seifert2022-06-191-4/+4
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/rebase: update EAPI 6 -> 8David Seifert2022-06-191-11/+11
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/primer3: update EAPI 6 -> 8David Seifert2022-06-192-30/+54
| | | | Signed-off-by: David Seifert <soap@gentoo.org>