From 53490294521a32eb37e6131b1f9931930368e70c Mon Sep 17 00:00:00 2001 From: Matthias Maier Date: Wed, 29 Apr 2020 16:07:13 -0500 Subject: sci-mathematics/petsc: drop old Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier --- sci-mathematics/petsc/Manifest | 2 - .../files/petsc-3.12.1-do_not_run_mpiexec.patch | 32 ---- .../files/petsc-3.12.1-make_hypre_configure.patch | 90 ---------- .../files/petsc-3.9.0-fix_sandbox_violation.patch | 17 -- sci-mathematics/petsc/petsc-3.11.3.ebuild | 193 -------------------- sci-mathematics/petsc/petsc-3.12.1.ebuild | 195 --------------------- 6 files changed, 529 deletions(-) delete mode 100644 sci-mathematics/petsc/files/petsc-3.12.1-do_not_run_mpiexec.patch delete mode 100644 sci-mathematics/petsc/files/petsc-3.12.1-make_hypre_configure.patch delete mode 100644 sci-mathematics/petsc/files/petsc-3.9.0-fix_sandbox_violation.patch delete mode 100644 sci-mathematics/petsc/petsc-3.11.3.ebuild delete mode 100644 sci-mathematics/petsc/petsc-3.12.1.ebuild (limited to 'sci-mathematics/petsc') diff --git a/sci-mathematics/petsc/Manifest b/sci-mathematics/petsc/Manifest index f7372ecf5e15..c224c7768822 100644 --- a/sci-mathematics/petsc/Manifest +++ b/sci-mathematics/petsc/Manifest @@ -1,3 +1 @@ -DIST petsc-3.11.3.tar.gz 33279017 BLAKE2B 870b8245e5e06d8538ea3ee1d01fa2cebade4a0bd79dfcf17d74e6201f41d21ca021e206744ece28847b434ece142a2789851b5514a8a1e3f82a8551288b695b SHA512 e545f69e87bc72950939ff3cec3e0ba225a5b3e7f1cb93b0fb6123194eb7240ac1d97ba397235d8ab872c653caab1427673124e5e1e706b796c0ae46ec1bcffa -DIST petsc-3.12.1.tar.gz 34592587 BLAKE2B b48056a1fe1d507338f7d145f5fceeab2b2f576470d8af90c9d7828de9b775daadf11198fecc46b5e48fcf1eb38addb366e3a908dab5c4ffaf7f9b71ff17b3d8 SHA512 df33170922c0b34136d2fd5bdc3c68a80d3a5873d66bfb03b2cea4a6456393c7181a8da673911b89ea0fcb51d5fd89b5b4c8b76ddb1df573180a92d029fbc1fb DIST petsc-3.13.0.tar.gz 35080264 BLAKE2B 0ac58e53751dbc6e053e3591cdf2363194e0cf7a493f252d879031e0135da16fa24e66974dd7bf07ce18558a75f8dd794e87f96590ad9e550d11edfeb462f727 SHA512 0590bb63d9c6dfd6ac03b1b88e5a8c11d42a0fd014084603d4d085060b126aa4341b4ec3a4d2b12146b971da327ccc7ede370e5633282bf44f269465aea32953 diff --git a/sci-mathematics/petsc/files/petsc-3.12.1-do_not_run_mpiexec.patch b/sci-mathematics/petsc/files/petsc-3.12.1-do_not_run_mpiexec.patch deleted file mode 100644 index 9c3d5047b0a6..000000000000 --- a/sci-mathematics/petsc/files/petsc-3.12.1-do_not_run_mpiexec.patch +++ /dev/null @@ -1,32 +0,0 @@ -diff --git a/config/BuildSystem/config/packages/MPI.py b/config/BuildSystem/config/packages/MPI.py -index c85bb504..7720eba9 100644 ---- a/config/BuildSystem/config/packages/MPI.py -+++ b/config/BuildSystem/config/packages/MPI.py -@@ -209,26 +209,11 @@ shared libraries and run with --known-mpi-shared-libraries=1') - raise RuntimeError('Could not locate MPIEXEC - please specify --with-mpiexec option') - # Support for spaces and () in executable names; also needs to handle optional arguments at the end - # TODO: This support for spaces and () should be moved to core BuildSystem -- self.mpiexec = self.mpiexec.replace(' ', '\\ ').replace('(', '\\(').replace(')', '\\)').replace('\ -',' -') -- if (hasattr(self, 'ompi_major_version') and int(self.ompi_major_version) >= 3): -- (out, err, ret) = Configure.executeShellCommand(self.mpiexec+' -help all', checkCommand = noCheck, timeout = 10, log = self.log) -- if out.find('--oversubscribe') >=0: -- self.mpiexec = self.mpiexec + ' --oversubscribe' -+ self.mpiexec = self.mpiexec + ' --oversubscribe' - - # using mpiexec environmental variables make sure mpiexec matches the MPI libraries and save the variables for testing in PetscInitialize() - # the variable HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE is not currently used. PetscInitialize() can check the existence of the environmental variable to - # determine if the program has been started with the correct mpiexec (will only be set for parallel runs so not clear how to check appropriately) -- (out, err, ret) = Configure.executeShellCommand(self.mpiexec+' -n 1 printenv', checkCommand = noCheck, timeout = 10, log = self.log) -- if ret: raise RuntimeError('Unable to run '+self.mpiexec+' with option "-n 1"\n'+err) -- if out.find('MPIR_CVAR_CH3') > -1: -- if hasattr(self,'ompi_major_version'): raise RuntimeError("Your libraries are from OpenMPI but it appears your mpiexec is from MPICH"); -- self.addDefine('HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE', 'MPIR_CVAR_CH3') -- elif out.find('MPIR_CVAR_CH3') > -1: -- if hasattr(self,'ompi_major_version'): raise RuntimeError("Your libraries are from OpenMPI but it appears your mpiexec is from MPICH"); -- self.addDefine('HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE', 'MPICH') -- elif out.find('OMPI_COMM_WORLD_SIZE') > -1: -- if hasattr(self,'mpich_numversion'): raise RuntimeError("Your libraries are from MPICH but it appears your mpiexec is from OpenMPI"); -- self.addDefine('HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE', 'OMP') - self.addMakeMacro('MPIEXEC', self.mpiexec) - self.mpiexec = self.mpiexec + ' -n 1' - diff --git a/sci-mathematics/petsc/files/petsc-3.12.1-make_hypre_configure.patch b/sci-mathematics/petsc/files/petsc-3.12.1-make_hypre_configure.patch deleted file mode 100644 index 9460d57e4617..000000000000 --- a/sci-mathematics/petsc/files/petsc-3.12.1-make_hypre_configure.patch +++ /dev/null @@ -1,90 +0,0 @@ -diff --git a/config/BuildSystem/config/packages/hypre.py b/config/BuildSystem/config/packages/hypre.py -index 869a1661..76067c8d 100644 ---- a/config/BuildSystem/config/packages/hypre.py -+++ b/config/BuildSystem/config/packages/hypre.py -@@ -5,10 +5,6 @@ class Configure(config.package.GNUPackage): - def __init__(self, framework): - config.package.GNUPackage.__init__(self, framework) - self.version = '2.18.1' -- self.minversion = '2.14' -- self.versionname = 'HYPRE_RELEASE_VERSION' -- self.versioninclude = 'HYPRE_config.h' -- self.requiresversion = 1 - self.gitcommit = 'v'+self.version - self.download = ['git://https://github.com/hypre-space/hypre','https://github.com/hypre-space/hypre/archive/'+self.gitcommit+'.tar.gz'] - self.functions = ['HYPRE_IJMatrixCreate'] -diff --git a/include/petsc/private/petschypre.h b/include/petsc/private/petschypre.h -index 81ca7136..b403e70e 100644 ---- a/include/petsc/private/petschypre.h -+++ b/include/petsc/private/petschypre.h -@@ -6,12 +6,6 @@ - #include - #include - --/* from version 2.16 on, HYPRE_BigInt is 64 bit for 64bit installations -- and 32 bit for 32bit installations -> not the best name for a variable */ --#if PETSC_PKG_HYPRE_VERSION_LT(2,16,0) --typedef PetscInt HYPRE_BigInt; --#endif -- - /* - With scalar type == real, HYPRE_Complex == PetscScalar; - With scalar type == complex, HYPRE_Complex is double __complex__ while PetscScalar may be std::complex -diff --git a/src/mat/impls/hypre/mhypre.c b/src/mat/impls/hypre/mhypre.c -index 8e8fe678..3533b99a 100644 ---- a/src/mat/impls/hypre/mhypre.c -+++ b/src/mat/impls/hypre/mhypre.c -@@ -15,10 +15,6 @@ - #include <_hypre_parcsr_ls.h> - #include <_hypre_sstruct_ls.h> - --#if PETSC_PKG_HYPRE_VERSION_LT(2,18,0) --#define hypre_ParCSRMatrixClone(A,B) hypre_ParCSRMatrixCompleteClone(A) --#endif -- - PETSC_INTERN PetscErrorCode MatPtAP_IS_XAIJ(Mat,Mat,MatReuse,PetscReal,Mat*); - - static PetscErrorCode MatHYPRE_CreateFromMat(Mat,Mat_HYPRE*); -@@ -65,7 +61,6 @@ static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat A_d, Mat A_o, HYPRE_IJMat - nnz_o[i] = 0; - } - } --#if PETSC_PKG_HYPRE_VERSION_GE(2,16,0) - { /* If we don't do this, the columns of the matrix will be all zeros! */ - hypre_AuxParCSRMatrix *aux_matrix; - aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij); -@@ -75,9 +70,6 @@ static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat A_d, Mat A_o, HYPRE_IJMat - aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij); - hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 1; - } --#else -- PetscStackCallStandard(HYPRE_IJMatrixSetDiagOffdSizes,(ij,nnz_d,nnz_o)); --#endif - ierr = PetscFree(nnz_d);CHKERRQ(ierr); - ierr = PetscFree(nnz_o);CHKERRQ(ierr); - } -@@ -235,11 +227,7 @@ static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat A, HYPRE_IJMatrix ij) - /* need to shift the diag column indices (hdiag->j) back to global numbering since hypre is expecting this */ - hjj = hdiag->j; - pjj = pdiag->j; --#if PETSC_PKG_HYPRE_VERSION_GE(2,16,0) - for (i=0; inz; i++) hjj[i] = pjj[i]; --#else -- for (i=0; inz; i++) hjj[i] = cstart + pjj[i]; --#endif - ierr = PetscArraycpy(hdiag->data,pdiag->a,pdiag->nz);CHKERRQ(ierr); - if (sameint) { - ierr = PetscArraycpy(hoffd->i,poffd->i,pA->A->rmap->n + 1);CHKERRQ(ierr); -@@ -249,12 +237,8 @@ static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat A, HYPRE_IJMatrix ij) - - /* need to move the offd column indices (hoffd->j) back to global numbering since hypre is expecting this - If we hacked a hypre a bit more we might be able to avoid this step */ --#if PETSC_PKG_HYPRE_VERSION_GE(2,16,0) - PetscStackCallStandard(hypre_CSRMatrixBigInitialize,(hoffd)); - jj = (PetscInt*) hoffd->big_j; --#else -- jj = (PetscInt*) hoffd->j; --#endif - pjj = poffd->j; - for (i=0; inz; i++) jj[i] = garray[pjj[i]]; - diff --git a/sci-mathematics/petsc/files/petsc-3.9.0-fix_sandbox_violation.patch b/sci-mathematics/petsc/files/petsc-3.9.0-fix_sandbox_violation.patch deleted file mode 100644 index 97f8dfed4d71..000000000000 --- a/sci-mathematics/petsc/files/petsc-3.9.0-fix_sandbox_violation.patch +++ /dev/null @@ -1,17 +0,0 @@ -diff --git a/config/PETSc/options/installDir.py b/config/PETSc/options/installDir.py -index 92f190d..047c85b 100644 ---- a/config/PETSc/options/installDir.py -+++ b/config/PETSc/options/installDir.py -@@ -41,12 +41,6 @@ class Configure(config.base.Configure): - self.dir = os.path.abspath(os.path.expanduser(self.framework.argDB['prefix'])) - self.petscDir = self.dir - self.petscArch = '' -- try: -- os.makedirs(os.path.join(self.dir,'PETScTestDirectory')) -- os.rmdir(os.path.join(self.dir,'PETScTestDirectory')) -- except: -- self.installSudoMessage = 'You do not have write permissions to the --prefix directory '+self.dir+'\nYou will be prompted for the sudo password for any external package installs' -- self.installSudo = 'sudo ' - else: - self.dir = os.path.abspath(os.path.join(self.petscdir.dir, self.arch.arch)) - self.petscDir = self.petscdir.dir diff --git a/sci-mathematics/petsc/petsc-3.11.3.ebuild b/sci-mathematics/petsc/petsc-3.11.3.ebuild deleted file mode 100644 index 50ce3b7f6631..000000000000 --- a/sci-mathematics/petsc/petsc-3.11.3.ebuild +++ /dev/null @@ -1,193 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python2_7 ) - -inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="http://www.mcs.anl.gov/petsc/" -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="afterimage boost complex-scalars cxx debug doc fftw - fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X" - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - complex-scalars? ( !hypre !superlu ) - hdf5? ( mpi ) - hypre? ( cxx mpi !superlu ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - superlu? ( !hypre ) -" - -RDEPEND=" - virtual/blas - virtual/lapack - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5[mpi?] ) - hypre? ( >=sci-libs/hypre-2.8.0b[mpi?] ) - metis? ( >=sci-libs/parmetis-4 ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[mpi?] ) - sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) - superlu? ( >=sci-libs/superlu-5 ) - X? ( x11-libs/libX11 ) -" - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} - virtual/pkgconfig - dev-util/cmake -" - -PATCHES=( - "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch \ - "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch -) - -src_prepare() { - default - - sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die -} - -# petsc uses --with-blah=1 and --with-blah=0 to en/disable options -petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" -} -# add external library: -# petsc_with use_flag libname libdir -# petsc_with use_flag libname include linking_libs -petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} -} - -# select between configure options depending on use flag -petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - # if mpi is built with knem support it needs /dev/knem too - addpredict /dev/knem - - # configureMPITypes with openmpi-2* insists on accessing the scaling - # governor rw. - addpredict /sys/devices/system/cpu/ - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - # C Support on CXX builds is enabled if possible i.e. when not using - # complex scalars (no complex type for both available at the same time) - - econf \ - scrollOutput=1 \ - FFLAGS="${FFLAGS} -fPIC" \ - CFLAGS="${CFLAGS} -fPIC" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - LDFLAGS="${LDFLAGS}" \ - --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ - --with-shared-libraries \ - --with-single-library \ - --with-clanguage=${mylang} \ - $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ - --with-petsc-arch=${PETSC_ARCH} \ - --with-precision=double \ - --with-gnu-compilers \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ - $(petsc_enable debug debugging) \ - $(petsc_enable mpi) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_enable fortran) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_select complex-scalars scalar-type complex real) \ - --with-windows-graphics=0 \ - --with-matlab=0 \ - --with-cmake:BOOL=1 \ - $(petsc_enable threads pthread) \ - $(petsc_with afterimage afterimage \ - /usr/include/libAfterImage -lAfterImage) \ - $(use_with hdf5) \ - $(petsc_with hypre hypre \ - /usr/include/hypre -lHYPRE) \ - $(petsc_with sparse suitesparse) \ - $(petsc_with superlu superlu \ - /usr/include/superlu -lsuperlu) \ - $(petsc_with X x) \ - $(petsc_with X x11) \ - $(petsc_with scotch ptscotch \ - /usr/include/scotch \ - [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack \ - /usr/include/scalapack -lscalapack) \ - $(petsc_with mumps mumps \ - /usr/include \ - [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - --with-imagemagick=0 \ - --with-python=0 \ - $(petsc_with boost) \ - $(petsc_with fftw) -} - -src_install() { - emake DESTDIR="${ED}" install - - # add PETSC_DIR to environmental variables - cat >> 99petsc <<- EOF - PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc - LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib - EOF - doenvd 99petsc - - if use doc ; then - docinto html - dodoc -r docs/*.html docs/changes docs/manualpages - fi -} diff --git a/sci-mathematics/petsc/petsc-3.12.1.ebuild b/sci-mathematics/petsc/petsc-3.12.1.ebuild deleted file mode 100644 index 845d7ff75d69..000000000000 --- a/sci-mathematics/petsc/petsc-3.12.1.ebuild +++ /dev/null @@ -1,195 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python2_7 ) - -inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="http://www.mcs.anl.gov/petsc/" -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="afterimage boost complex-scalars cxx debug doc fftw - fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X" - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - complex-scalars? ( !hypre !superlu ) - hdf5? ( mpi ) - hypre? ( cxx mpi !superlu ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - superlu? ( !hypre ) -" - -RDEPEND=" - virtual/blas - virtual/lapack - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5[mpi?] ) - hypre? ( >=sci-libs/hypre-2.18.0[mpi?] ) - metis? ( >=sci-libs/parmetis-4 ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[mpi?] ) - sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) - superlu? ( >=sci-libs/superlu-5 ) - X? ( x11-libs/libX11 ) -" - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} - virtual/pkgconfig - dev-util/cmake -" - -PATCHES=( - "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch - "${FILESDIR}"/${PN}-3.9.0-fix_sandbox_violation.patch - "${FILESDIR}"/${PN}-3.12.1-make_hypre_configure.patch - "${FILESDIR}"/${PN}-3.12.1-do_not_run_mpiexec.patch -) - -src_prepare() { - default - - sed -i -e 's%/usr/bin/env python%/usr/bin/env python2%' configure || die -} - -# petsc uses --with-blah=1 and --with-blah=0 to en/disable options -petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" -} -# add external library: -# petsc_with use_flag libname libdir -# petsc_with use_flag libname include linking_libs -petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} -} - -# select between configure options depending on use flag -petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - # if mpi is built with knem support it needs /dev/knem too - addpredict /dev/knem - - # configureMPITypes with openmpi-2* insists on accessing the scaling - # governor rw. - addpredict /sys/devices/system/cpu/ - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - # C Support on CXX builds is enabled if possible i.e. when not using - # complex scalars (no complex type for both available at the same time) - - econf \ - scrollOutput=1 \ - FFLAGS="${FFLAGS} -fPIC" \ - CFLAGS="${CFLAGS} -fPIC" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - LDFLAGS="${LDFLAGS}" \ - --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ - --with-shared-libraries \ - --with-single-library \ - --with-clanguage=${mylang} \ - $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ - --with-petsc-arch=${PETSC_ARCH} \ - --with-precision=double \ - --with-gnu-compilers \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ - $(petsc_enable debug debugging) \ - $(petsc_enable mpi) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_enable fortran) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_select complex-scalars scalar-type complex real) \ - --with-windows-graphics=0 \ - --with-matlab=0 \ - --with-cmake:BOOL=1 \ - $(petsc_enable threads pthread) \ - $(petsc_with afterimage afterimage \ - /usr/include/libAfterImage -lAfterImage) \ - $(use_with hdf5) \ - $(petsc_with hypre hypre \ - /usr/include/hypre -lHYPRE) \ - $(use_with sparse suitesparse) \ - $(petsc_with superlu superlu \ - /usr/include/superlu -lsuperlu) \ - $(use_with X x) \ - $(use_with X x11) \ - $(petsc_with scotch ptscotch \ - /usr/include/scotch \ - [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack \ - /usr/include/scalapack -lscalapack) \ - $(use_with mumps mumps \ - /usr/include \ - [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - --with-imagemagick=0 \ - --with-python=0 \ - $(use_with boost) \ - $(use_with fftw) -} - -src_install() { - emake DESTDIR="${ED}" install - - # add PETSC_DIR to environmental variables - cat >> 99petsc <<- EOF - PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc - LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib - EOF - doenvd 99petsc - - if use doc ; then - docinto html - dodoc -r docs/*.html docs/changes docs/manualpages - fi -} -- cgit v1.2.3-65-gdbad