Added missing README file

Package-Manager: portage-2.0.54

3 files changed, 34 insertions, 2 deletions

diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog
index 99d686c9f63a..52295f66e4a2 100644
--- a/sci-biology/emboss/ChangeLog
+++ b/sci-biology/emboss/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/emboss
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.25 2006/01/21 17:19:43 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.26 2006/01/23 20:57:32 ribosome Exp $
+
+  23 Jan 2006; Olivier Fisette <ribosome@gentoo.org> +files/README.Gentoo:
+  Added missing README file (fixes bug #120071).
 
 *emboss-3.0.0-r1 (21 Jan 2006)
 
diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest
index d698bd34bded..73666b04631d 100644
--- a/sci-biology/emboss/Manifest
+++ b/sci-biology/emboss/Manifest
@@ -1,7 +1,8 @@
-MD5 68d9c5ea7a46b2655d34042f834081de ChangeLog 5618
+MD5 9159c8aaa14ae277c99337ce1e64c617 ChangeLog 5743
 MD5 46722aa38f5e73669339e87f01b07197 emboss-3.0.0-r1.ebuild 2926
 MD5 ecb49ecef824e368a8ad751b90f19186 emboss-3.0.0.ebuild 1854
 MD5 ef2dfa3d13837026f59c0cf5f04f67c5 files/22emboss-r1 110
+MD5 615888722f8d6a0c918f936e0cc1cfcd files/README.Gentoo 1326
 MD5 84fbde044d74a82c084fa22d5d59ae8e files/digest-emboss-3.0.0 66
 MD5 84fbde044d74a82c084fa22d5d59ae8e files/digest-emboss-3.0.0-r1 66
 MD5 6051afb1f26bf343082490327784b958 metadata.xml 1013
diff --git a/sci-biology/emboss/files/README.Gentoo b/sci-biology/emboss/files/README.Gentoo
new file mode 100644
index 000000000000..ce37576f0fc4
--- /dev/null
+++ b/sci-biology/emboss/files/README.Gentoo
@@ -0,0 +1,28 @@
+Using EMBOSS on Gentoo systems
+
+Codon data files location
+
+The codon data files that are distributed with EMBOSS are installed in the 
+"/usr/share/EMBOSS/data/CODONS.orig" directory instead of the usual
+"/usr/share/EMBOSS/data/CODONS". This is done to avoid confusion between these
+codon files and those installed with the CUTG database. The names of these files
+sometimes vary only by their case. Having both sets of files in the same directory
+is also impossible on systems such as MacOSX, where the root filesystem is case
+insensitive. If you do not have the CUTG database installed and want to use the
+codon files distributed with EMBOSS, you can symlink the "CODONS.orig" directory
+to "CODONS":
+
+	cd /usr/share/EMBOSS/data
+	ln -s CODONS.orig CODONS
+
+Restriction enzymes equivalence file location
+
+The restriction enzymes equivalence file distributed with EMBOSS is installed as
+"/usr/share/EMBOSS/data/embossre.equ.orig" rather than the usual
+"/usr/share/EMBOSS/data/embossre.equ". This is done to avoid a file collision
+with the equivalence file provided by the Rebase database. If you do not have the
+Rebase database installed and want to use the equivalence file distributed with
+EMBOSS, you can symlink the "embossre.equ.orig" file to "embossre.equ":
+
+	cd /usr/share/EMBOSS/data
+	ln -s embossre.equ.orig embossre.equ