The database for the BALBES automated crystallographic molecular replacement pipeline

Package-Manager: portage-2.2_rc62/cvs/Linux x86_64

4 files changed, 79 insertions, 0 deletions

diff --git a/sci-libs/balbes-db/ChangeLog b/sci-libs/balbes-db/ChangeLog
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+# ChangeLog for sci-libs/balbes-db
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/balbes-db/ChangeLog,v 1.1 2010/02/04 23:24:50 jlec Exp $
+
+*balbes-db-6.1.3 (04 Feb 2010)
+
+  04 Feb 2010; Justin Lecher (jlec) <jlec@gentoo.org>
+  +balbes-db-6.1.3.ebuild, +metadata.xml:
+  Balbes Fragment Database
+
diff --git a/sci-libs/balbes-db/Manifest b/sci-libs/balbes-db/Manifest
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+++ b/sci-libs/balbes-db/Manifest
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+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST ccp4-6.1.3-balbesdb-10-11-08.tar.gz 600856059 RMD160 4b57aecf3d0961ea4043c04074e686b8950b903a SHA1 ca162be8de10860afbb0fe0b17e12a3ee5d0cfef SHA256 5606fc5e131138b56fa3a1afce014225a6c07826b99587f132f6c337585f4f0d
+EBUILD balbes-db-6.1.3.ebuild 1334 RMD160 fc49233b62223582d3e5beb9822b768dcf2e2db3 SHA1 97d590744be0fdc90178f0e6f8df3bd2feecc74d SHA256 48abc91c5799032129f800f95bd013e6eb8fc0a53c7147f2eba41cfbd2006080
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+MISC metadata.xml 215 RMD160 bc9c07aa91f2f175542244e4e4522a73558210a1 SHA1 facb283386de1c0b6b938cdcd4dde04d1694298b SHA256 13f32353652adbd3d934d41381cfc2cacc9e1127c508cebc73806cc1026ee80c
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diff --git a/sci-libs/balbes-db/balbes-db-6.1.3.ebuild b/sci-libs/balbes-db/balbes-db-6.1.3.ebuild
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+++ b/sci-libs/balbes-db/balbes-db-6.1.3.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/balbes-db/balbes-db-6.1.3.ebuild,v 1.1 2010/02/04 23:24:50 jlec Exp $
+
+EAPI="3"
+
+MY_P="ccp4-${PV}"
+
+SRC="ftp://ftp.ccp4.ac.uk/ccp4"
+VERSION="10-11-08"
+
+DESCRIPTION="The database for the BALBES automated crystallographic molecular replacement pipeline"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~fei/balbes/"
+SRC_URI="${SRC}/${PV}/${MY_P}-${PN/-/}-${VERSION}.tar.gz"
+
+LICENSE="ccp4"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	>=dev-python/pyxml-0.8.4
+	sci-libs/monomer-db"
+DEPEND="${RDEPEND}"
+RESTRICT="binchecks strip"
+
+S="${WORKDIR}/${MY_P}"
+
+src_install() {
+	dodir /usr/share/balbes/BALBES_0.0.1
+	rm -rf share/balbes/BALBES_0.0.1/dic
+	# We don't want to wait around to copy all this, or suck up double
+	# the disk space
+	einfo "Installing files, which can take some time ..."
+	mv "${S}"/share/balbes/BALBES_0.0.1/* "${ED}"/usr/share/balbes/BALBES_0.0.1/ || die
+	# db files should be executable
+	find "${D}"/usr/share/balbes/BALBES_0.0.1/ \
+		-type f \
+		-exec chmod 664 '{}' \;
+	dosym ../../../ccp4/data/monomers /usr/share/balbes/BALBES_0.0.1/dic || die
+
+	cat >> "${T}"/20balbes <<- EOF
+	BALBES_ROOT="${EPREFIX}/usr/share/balbes/BALBES_0.0.1/"
+	EOF
+
+	doenvd "${T}"/20balbes
+}
diff --git a/sci-libs/balbes-db/metadata.xml b/sci-libs/balbes-db/metadata.xml
new file mode 100644
index 000000000000..efb490d78817
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+++ b/sci-libs/balbes-db/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+  <email>sci@gentoo.org</email>
+</maintainer>
+</pkgmetadata>