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* Add mammoth, a nice structural alignment program. It contains the MaxSub ↵Donnie Berkholz2007-12-106-0/+126
| | | | | | algorithm, which is used by lots of people. Package-Manager: portage-2.1.4_rc4
* Adding ~amd64 as it seems to work now.Jeffrey Gardner2007-12-083-11/+14
| | | | Package-Manager: portage-2.1.4_rc9
* Latest version - thanks to Martin Mokrejs on bug #201495Jeffrey Gardner2007-12-074-15/+88
| | | | Package-Manager: portage-2.1.4_rc7
* Version bump (fixes bug #191882).Markus Dittrich2007-11-246-13/+109
| | | | Package-Manager: portage-2.1.3.19
* Version bump. See bug #191867.Markus Dittrich2007-11-225-12/+68
| | | | Package-Manager: portage-2.1.3.19
* Add ~alphaRaúl Porcel2007-11-133-11/+14
| | | | Package-Manager: portage-2.1.3.19
* Got tired of launching via cli, so adding a .desktop entry.Jeffrey Gardner2007-10-224-10/+33
| | | | Package-Manager: portage-2.1.3.15
* gotta remember keychainJeffrey Gardner2007-10-211-16/+16
| | | | Package-Manager: portage-2.1.3.15
* reverting my late-night quotehappinessJeffrey Gardner2007-10-214-9/+13
| | | | Package-Manager: portage-2.1.3.15
* removing specific dep on pdflib-6 as seaview appears to work with the latest ↵Jeffrey Gardner2007-10-213-11/+14
| | | | | | pdflib Package-Manager: portage-2.1.3.15
* Adding sci-biology/muscle as a dependency.Jeffrey Gardner2007-10-213-10/+14
| | | | Package-Manager: portage-2.1.3.15
* Adding ~amd64 and ~ppc for seaview.Jeffrey Gardner2007-10-213-15/+18
| | | | Package-Manager: portage-2.1.3.15
* Bumping to latest version which contains several new features.Jeffrey Gardner2007-10-216-29/+81
| | | | Package-Manager: portage-2.1.3.15
* Commenting out references to USE=mpi, which is currently broken.Jeffrey Gardner2007-10-194-20/+22
| | | | Package-Manager: portage-2.1.3.15
* Commented out a stray reference to mpi that I missed the first time.Jeffrey Gardner2007-10-144-21/+24
| | | | Package-Manager: portage-2.1.3.13
* New ncbi version and cleanup of stable ebuild.Jeffrey Gardner2007-10-135-47/+280
| | | | Package-Manager: portage-2.1.3.12
* Version bump (fixes bug #191861).Markus Dittrich2007-10-136-13/+93
| | | | Package-Manager: portage-2.1.3.12
* Fixed wrongs SRC_URI and HOMEPAGE (see bug #195080). Also bumped to new version.Markus Dittrich2007-10-105-14/+60
| | | | Package-Manager: portage-2.1.3.12
* Add needed quotes; don't specify the default for DESTTREE; add die messages.Donnie Berkholz2007-10-073-13/+26
| | | | Package-Manager: portage-2.1.3.9
* New version (fixes bug #191874).Markus Dittrich2007-10-065-15/+90
| | | | Package-Manager: portage-2.1.3.11
* using cvs admin -kb patch to get rid of header changesJeffrey Gardner2007-09-221-8/+8
| | | | Package-Manager: portage-2.1.3.9
* Change sed separator to :, now it doesn't fail if CC contains a path.Santiago M. Mola2007-09-203-11/+15
| | | | Package-Manager: portage-2.1.3.9
* New upstream version.Olivier Fisette2007-09-195-10/+75
| | | | Package-Manager: portage-2.1.3.9
* Used cvs manually to add patches without mangling them.Jeffrey Gardner2007-09-171-1/+4
| | | | Package-Manager: portage-2.1.3.9
* Trying to avoid repoman/cvs mangling patches.Jeffrey Gardner2007-09-171-12/+12
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* Fixup for amd64. Looks like repoman is going to mangle my patches again :(Jeffrey Gardner2007-09-174-13/+119
| | | | Package-Manager: portage-2.1.3.9
* Pulling until I can debug the ebuild.Jeffrey Gardner2007-09-174-104/+9
| | | | Package-Manager: portage-2.1.3.9
* Add upstream patches and disable parallel install on amd64.Jeffrey Gardner2007-09-176-5/+384
| | | | Package-Manager: portage-2.1.3.9
* Version bump. Fixes bug #191863.Markus Dittrich2007-09-164-6/+36
| | | | Package-Manager: portage-2.1.3.9
* Added to ~amd64.Olivier Fisette2007-08-303-11/+14
| | | | Package-Manager: portage-2.1.2.12
* New upstream version.Olivier Fisette2007-08-202-8/+24
| | | | Package-Manager: portage-2.1.2.11
* New upstream version.Olivier Fisette2007-08-206-2/+104
| | | | Package-Manager: portage-2.1.2.11
* Fix broken Manifest.Zac Medico2007-08-081-4/+14
| | | | Package-Manager: portage-2.2_pre7583
* Removed multilib-strict fix, as it was moved to the embassy eclass.Olivier Fisette2007-08-073-16/+18
| | | | Package-Manager: portage-2.1.2.11
* Fixing the DEPEND/RDEPEND for the move of net-www/apache to ↵Christian Heim2007-07-293-13/+28
| | | | | | www-servers/apache (#78622). Package-Manager: portage-2.1.3_rc9
* Drop virtual/x11 references.Donnie Berkholz2007-07-223-38/+28
| | | | Package-Manager: portage-2.1.3_rc8
* Drop virtual/x11 references.Donnie Berkholz2007-07-227-21/+27
| | | | Package-Manager: portage-2.1.3_rc8
* Fix broken Manifest for ChangeLog.Zac Medico2007-07-191-4/+14
| | | | Package-Manager: portage-2.2_pre7306
* Fix broken ManifestZac Medico2007-07-181-4/+4
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* Fix broken Manifest.Zac Medico2007-07-181-8/+8
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* New meta-package for EMBASSY packages building against EMBOSS 5.0.0.Olivier Fisette2007-07-183-1/+36
| | | | Package-Manager: portage-2.1.2.9
* We still need an AMD64 ebuild for EMBOSS 4.0.0 (my mistake).Olivier Fisette2007-07-185-9/+54
| | | | Package-Manager: portage-2.1.2.9
* Initial import.Olivier Fisette2007-07-184-0/+38
| | | | Package-Manager: portage-2.1.2.9
* New upstream packaging for EMBOSS 5.0.0.Olivier Fisette2007-07-183-12/+39
| | | | Package-Manager: portage-2.1.2.9
* New upstream packaging for EMBOSS 5.0.0.Olivier Fisette2007-07-1810-3/+95
| | | | Package-Manager: portage-2.1.2.9
* Initial import. This is a repackaging of embassy-phylipnew for EMBOSS 5.0.0.Olivier Fisette2007-07-184-0/+39
| | | | Package-Manager: portage-2.1.2.9
* Pruned old version that will never be stabilised.Olivier Fisette2007-07-184-39/+9
| | | | Package-Manager: portage-2.1.2.9
* New upstream packaging for EMBOSS 5.0.0.Olivier Fisette2007-07-184-1/+51
| | | | Package-Manager: portage-2.1.2.9
* Initial import. This is a repackaging of embassy-memenew for EMBOSS 5.0.0.Olivier Fisette2007-07-185-4/+57
| | | | Package-Manager: portage-2.1.2.9
* New upstream packaging for EMBOSS 5.0.0.Olivier Fisette2007-07-183-12/+39
| | | | Package-Manager: portage-2.1.2.9