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* sci-biology/primer3: Drop oldJustin Lecher2012-12-174-101/+16
| | | | | Package-Manager: portage-2.2.0_alpha148/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* Stable for ppc, wrt bug #446992Agostino Sarubbo2012-12-163-5/+8
| | | | Package-Manager: portage-2.1.11.31/cvs/Linux ppc64
* Stable for x86, wrt bug #446992Agostino Sarubbo2012-12-163-5/+8
| | | | Package-Manager: portage-2.1.11.31/cvs/Linux x86_64
* Update LICENSE, HPND according to LICENSE file.Ulrich Müller2012-12-145-23/+37
| | | | | Package-Manager: portage-2.1.11.37/cvs/Linux x86_64 Manifest-Sign-Key: 0xE7BE08CA7DC6EA25
* Fix LICENSE, MIT (Expat) according to COPYING file.Ulrich Müller2012-12-145-15/+29
| | | | | Package-Manager: portage-2.1.11.37/cvs/Linux x86_64 Manifest-Sign-Key: 0xE7BE08CA7DC6EA25
* Stable for amd64, wrt bug #446992Agostino Sarubbo2012-12-123-16/+8
| | | | Package-Manager: portage-2.1.11.31/cvs/Linux x86_64
* sci-biology/primer3: Fix buildsystem patch to respect RANLIB, #447026Justin Lecher2012-12-123-10/+23
| | | | | Package-Manager: portage-2.2.0_alpha147/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/primer3: Fix testJustin Lecher2012-12-125-22/+26
| | | | | Package-Manager: portage-2.2.0_alpha148/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/primer3: Version Bump, #446982; cleaned oldJustin Lecher2012-12-125-49/+198
| | | | | Package-Manager: portage-2.2.0_alpha148/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/t-coffee: Version BumpJustin Lecher2012-12-116-21/+107
| | | | | Package-Manager: portage-2.2.0_alpha147/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/fasta: Drop hardwired icc supportJustin Lecher2012-12-104-39/+27
| | | | | Package-Manager: portage-2.2.0_alpha144/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* Add ~ppc, wrt bug #432368Agostino Sarubbo2012-12-106-40/+21
| | | | Package-Manager: portage-2.1.11.31/cvs/Linux ppc64
* sci-biology/qrna: Drop oldJustin Lecher2012-12-063-61/+8
| | | | | Package-Manager: portage-2.2.0_alpha144/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* x86 stable wrt bug #441020Paweł Hajdan2012-12-063-5/+18
| | | | | Package-Manager: portage-2.1.11.31/cvs/Linux i686 Manifest-Sign-Key: 0x30427902
* sci-biology/emboss: Fix compilation problem with toplplot, #391669, thanks ↵Justin Lecher2012-11-194-19/+257
| | | | | | | Juergen Rose for the patch Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/allpaths: Block sci-biology/allpathslg due to file collision, ↵Justin Lecher2012-11-195-15/+24
| | | | | | | #443740 Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/allpathslg: Block sci-biology/allpaths due to file collision, ↵Justin Lecher2012-11-195-20/+26
| | | | | | | #443740 Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* x86 stable, see bug 328437Andreas Schuerch2012-11-133-5/+19
| | | | Package-Manager: portage-2.1.11.9/cvs/Linux i686
* Stable for amd64, wrt bug #328437Agostino Sarubbo2012-11-113-15/+8
| | | | Package-Manager: portage-2.1.11.31/cvs/Linux x86_64
* Stable for amd64, wrt bug #441020Agostino Sarubbo2012-11-103-15/+8
| | | | Package-Manager: portage-2.1.11.31/cvs/Linux x86_64
* sci-biology/wgs-assembler: Respect LDFLAGS, #331935; fix linking with gold; ↵Justin Lecher2012-11-107-22/+335
| | | | | | | handle static-libs Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* Update ChangeLogJustin Lecher2012-11-102-6/+6
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/cufflinks: Drop hard version dep for boost, #440630, and fix ↵Justin Lecher2012-11-106-28/+1412
| | | | | | | compatibility with version 1.5*; Fix gcc-4.7 problems Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/express: Keyworded for ~x86; drop needless version restriction ↵Justin Lecher2012-11-093-16/+17
| | | | | | | of boost, #440634 Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/qrna: Move to EAPI=4Justin Lecher2012-11-093-44/+44
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/allpaths: Fix for latest boost, #421727; fix for additional ↵Justin Lecher2012-11-087-22/+662
| | | | | | | problem with gcc-4.7; enable openmp support; Respect LDFALGS and CFLAGS everywhere; make it gold resistant Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mira: Version Bump, #377807Justin Lecher2012-11-076-11/+107
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/mira: Fix for boost >1.50, #425468Justin Lecher2012-11-075-16/+138
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/ncbi-tools++: Correct patch naming againJustin Lecher2012-11-053-15/+18
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/ncbi-tools++: Correct for new version numberJustin Lecher2012-11-033-13/+17
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/bioperl-run: Dropped oldJustin Lecher2012-11-023-64/+16
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/ncbi-tools++: Drop old, duplicate with lower version number for ↵Justin Lecher2012-11-023-23/+39
| | | | | | | new versioning schema Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* QA: drop maximum boost version dep; if it fails to build, it has to be fixed.Diego Elio Pettenò2012-10-313-15/+21
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x1CD13C8AD4301342
* Avoid using a slot depend since now boost is unslotted.Diego Elio Pettenò2012-10-313-13/+19
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x1CD13C8AD4301342
* Avoid using a slot depend since now boost is unslotted; remove pointless ↵Diego Elio Pettenò2012-10-313-15/+21
| | | | | | | filter-ldflags for --as-needed. Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x1CD13C8AD4301342
* sci-biology/bioperl: Drop versions with unsolvable dep setsJustin Lecher2012-10-284-144/+16
| | | | | Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* Update dependency after package move from x11-libs/openmotif to x11-libs/motif.Ulrich Müller2012-10-2419-82/+139
| | | | | Package-Manager: portage-2.1.11.30/cvs/Linux x86_64 Manifest-Sign-Key: 0xE7BE08CA7DC6EA25
* sci-biology/mammoth: Remove virtual/fortran and always call ↵Justin Lecher2012-10-194-20/+21
| | | | | | | fortran-2_pkg_setup as intend by the updated fortran-2.eclass Package-Manager: portage-2.2.0_alpha141/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/shrimp: Vesion BumpJustin Lecher2012-10-183-5/+76
| | | | | Package-Manager: portage-2.2.0_alpha141/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/shrimp: Do not install elf in usr/share, #438652Justin Lecher2012-10-185-79/+49
| | | | | Package-Manager: portage-2.2.0_alpha141/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/seaview: Drop oldJustin Lecher2012-10-183-83/+9
| | | | | Package-Manager: portage-2.2.0_alpha141/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/glimmerhmm: Drop oldJustin Lecher2012-10-183-54/+9
| | | | | Package-Manager: portage-2.2.0_alpha141/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* x86 stable wrt bug #430524Paweł Hajdan2012-10-173-5/+19
| | | | Package-Manager: portage-2.1.11.9/cvs/Linux i686
* x86 stable wrt bug #432366Paweł Hajdan2012-10-173-5/+18
| | | | Package-Manager: portage-2.1.11.9/cvs/Linux i686
* sci-biology/trf: Drop old; move to EAPI=4; use QA_PREBUILT, #436718Justin Lecher2012-10-064-53/+29
| | | | Package-Manager: portage-2.2.0_alpha135/cvs/Linux x86_64
* Version bump, remove oldAndrey Kislyuk2012-10-055-84/+22
| | | | Package-Manager: portage-2.2.0_alpha134/cvs/Linux x86_64
* Version bump, remove old, add git depAndrey Kislyuk2012-09-304-58/+19
| | | | Package-Manager: portage-2.2.0_alpha134/cvs/Linux x86_64
* QA_DT_HASH (old/deprecated) -> QA_FLAGS_IGNORED (new hotness).Mike Frysinger2012-09-244-18/+32
| | | | Package-Manager: portage-2.2.0_alpha131/cvs/Linux x86_64
* Stable for amd64, wrt bug #430524Agostino Sarubbo2012-09-142-5/+8
| | | | Package-Manager: portage-2.1.11.9/cvs/Linux x86_64
* Stable for amd64, wrt bug #432366Agostino Sarubbo2012-09-144-32/+14
| | | | Package-Manager: portage-2.1.11.9/cvs/Linux x86_64