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Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/GBrowse-2.48-r12
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-1.6.92
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-db-1.6.92
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-network-1.6.92
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-run-1.6.92
-rw-r--r--metadata/md5-cache/sci-biology/diya-1.0_rc42
-rw-r--r--metadata/md5-cache/sci-biology/vienna-rna-2.1.12
-rw-r--r--metadata/md5-cache/sci-biology/vienna-rna-2.1.82
8 files changed, 8 insertions, 8 deletions
diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
index 50bebb04d140..83927b94931f 100644
--- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
+++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
@@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ )
RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] >=app-admin/webapp-config-1.50.15
SLOT=0
SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz
-_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 16783e418aca3ffa461d68310bf7ab12
+_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp 16783e418aca3ffa461d68310bf7ab12
_md5_=bccaeef3292f6df307fc14fb5a2a74b2
diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9
index 975bdfb4666b..1e6e2aa47dc2 100644
--- a/metadata/md5-cache/sci-biology/bioperl-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Arr
REQUIRED_USE=minimal? ( !graphviz )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
-_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
_md5_=be22a76392a6e5c121e4b6d388045faa
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
index 4f2cfdebaeac..67ef6be0812c 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
RESTRICT=test
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
_md5_=2470d7ecf1b6ff1902a8d74057748480
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
index d8a74821e4bf..9b8d483dda6d 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
-_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
_md5_=8f7c4053ffbec76cfad29cca2d99847b
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
index 540c5422e6e3..fac196a49d16 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl
RESTRICT=test
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
-_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
_md5_=9caec4e5b47cbf306a1689903f2a018a
diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4
index 9868f3f7a6cd..0cf1b382bece 100644
--- a/metadata/md5-cache/sci-biology/diya-1.0_rc4
+++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4
@@ -9,5 +9,5 @@ LICENSE=GPL-3
RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal? ( sci-biology/mummer sci-biology/glimmer sci-biology/trnascan-se sci-biology/infernal ) dev-lang/perl:=[-build(-)]
SLOT=0
SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz
-_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
+_eclasses_=desktop 7fd20552ce4cc97e8acb132a499a7dd8 epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf
_md5_=5d4639d7c08c43e2c2208492508fd56c
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
index e5b9dcf0b525..d5e43890989e 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? (
REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
SLOT=0
SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz
-_eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 autotools-utils 95db0904ad0f62535e18e5ccb67cce5e desktop 7fd20552ce4cc97e8acb132a499a7dd8 distutils-r1 054fa5f0442c7ccb4d4a05410d92123b epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 8386b016a2b3bbefa88443fdaa898057 python-utils-r1 dd532a387632f19bfc5523fc2289a9a0 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 autotools-utils 95db0904ad0f62535e18e5ccb67cce5e desktop 7fd20552ce4cc97e8acb132a499a7dd8 distutils-r1 054fa5f0442c7ccb4d4a05410d92123b epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 8386b016a2b3bbefa88443fdaa898057 python-utils-r1 dd532a387632f19bfc5523fc2289a9a0 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils ff2ff954e6b17929574eee4efc5152ba
_md5_=1e58c830b49ced05ae9960fcc2dead13
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
index 73167ed132d8..51581872b44d 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? (
REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
SLOT=0
SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz
-_eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 autotools-utils 95db0904ad0f62535e18e5ccb67cce5e desktop 7fd20552ce4cc97e8acb132a499a7dd8 distutils-r1 054fa5f0442c7ccb4d4a05410d92123b epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 8386b016a2b3bbefa88443fdaa898057 python-utils-r1 dd532a387632f19bfc5523fc2289a9a0 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=autotools 7d999b62b8749fad43fff00620cedf47 autotools-utils 95db0904ad0f62535e18e5ccb67cce5e desktop 7fd20552ce4cc97e8acb132a499a7dd8 distutils-r1 054fa5f0442c7ccb4d4a05410d92123b epatch ed88001f77c6dd0d5f09e45c1a5b480e estack 686eaab303305a908fd57b2fd7617800 eutils fcb2aa98e1948b835b5ae66ca52868c5 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib 318e8ae683e57fd3ccd0d31a769d8ee8 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b perl-module 97206c028d9bdc9f248e022ac5c9fc83 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 8386b016a2b3bbefa88443fdaa898057 python-utils-r1 dd532a387632f19bfc5523fc2289a9a0 toolchain-funcs 512eb3367f507ebaa1d1d43ab7d66e6c unpacker b5891c9326ad2e7905c011d44c927c34 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils ff2ff954e6b17929574eee4efc5152ba
_md5_=b2a6486af275e75c6365ab7eeba1e0bd