1 files changed, 0 insertions, 68 deletions
diff --git a/sci-biology/samtools/samtools-1.0.ebuild b/sci-biology/samtools/samtools-1.0.ebuild
deleted file mode 100644
index 0fb9d04344bb..000000000000
--- a/sci-biology/samtools/samtools-1.0.ebuild
+++ /dev/null
@@ -1,68 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils multilib python-r1 toolchain-funcs
-
-DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="examples"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-CDEPEND="
-	sys-libs/ncurses:0=
-	sci-libs/htslib"
-
-RDEPEND="${CDEPEND}
-	dev-lang/lua
-	dev-lang/perl
-	${PYTHON_DEPS}"
-DEPEND="${CDEPEND}
-	virtual/pkgconfig"
-
-src_prepare() {
-	find htslib-1.0 -delete || die
-
-	sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die
-
-	tc-export CC AR
-
-	sed \
-		-e '/htslib.mk/d' \
-		-i Makefile || die
-
-}
-
-src_compile() {
-	local mymakeargs=(
-		LIBCURSES="$($(tc-getPKG_CONFIG) --libs ncurses)"
-		CC="$(tc-getCC)"
-		LDFLAGS="${LDFLAGS}"
-		CFLAGS="${CFLAGS}"
-		HTSDIR="${EPREFIX}/usr/include"
-		HTSLIB=$($(tc-getPKG_CONFIG) --libs htslib)
-		)
-	emake "${mymakeargs[@]}"
-}
-
-src_install() {
-	dobin samtools $(find misc -type f -executable)
-
-	python_replicate_script "${ED}"/usr/bin/varfilter.py
-
-	doman ${PN}.1
-	dodoc AUTHORS NEWS README
-
-	if use examples; then
-		insinto /usr/share/${PN}
-		doins -r examples
-	fi
-}