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| author |   Justin Lecher <jlec@gentoo.org> | 2013-03-11 15:25:21 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-03-11 15:25:21 +0000 |
| commit | ad43f44fff3b421434bdfd366ab33eb2f1026699 (patch) | |
| tree | 695df99094a19ddaa6af20bd334fd32819bc9fc1 /sci-biology/gatk/gatk-2.4.ebuild | |
| parent | sci-biology/infernal: Drop Andrey as maintainer so that bugs get assigned to ... (diff) | |
| download | gentoo-2-ad43f44fff3b421434bdfd366ab33eb2f1026699.tar.gz gentoo-2-ad43f44fff3b421434bdfd366ab33eb2f1026699.tar.bz2 gentoo-2-ad43f44fff3b421434bdfd366ab33eb2f1026699.zip | |
sci-biology/gatk: Version BUmp and move to MIT license
(Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-biology/gatk/gatk-2.4.ebuild')
| -rw-r--r-- | sci-biology/gatk/gatk-2.4.ebuild | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/sci-biology/gatk/gatk-2.4.ebuild b/sci-biology/gatk/gatk-2.4.ebuild new file mode 100644 index 000000000000..a472d8c12158 --- /dev/null +++ b/sci-biology/gatk/gatk-2.4.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-2.4.ebuild,v 1.1 2013/03/11 15:25:21 jlec Exp $ + +EAPI=5 + +EANT_BUILD_TARGET="dist" +EANT_NEEDS_TOOLS="true" +JAVA_ANT_REWRITE_CLASSPATH="true" + +inherit java-pkg-2 java-ant-2 vcs-snapshot + +DESCRIPTION="The Genome Analysis Toolkit" +HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" +SRC_URI="https://github.com/broadgsa/gatk/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +IUSE="" +KEYWORDS="~amd64" + +COMMON_DEPS="" +DEPEND=" + >=virtual/jdk-1.6 + ${COMMON_DEPS}" +RDEPEND=" + >=virtual/jre-1.6 + ${COMMON_DEPS}" + +src_prepare() { + sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die + java-pkg-2_src_prepare +} + +src_install() { + java-pkg_dojar dist/*.jar + java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar + java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar +} |