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authorJustin Lecher <jlec@gentoo.org>2012-06-28 16:39:03 +0000
committerJustin Lecher <jlec@gentoo.org>2012-06-28 16:39:03 +0000
commite64667465665243cc03a128cb90d0c7096ac1db3 (patch)
tree27c39be9d68c33e6532ff7f643c75c839b6b277e /sci-biology/hmmer
parentFix patch (diff)
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Plain patch
Diffstat (limited to 'sci-biology/hmmer')
-rw-r--r--sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch10
1 files changed, 5 insertions, 5 deletions
diff --git a/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch b/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch
index f8afd629860f..f8fa51773eb7 100644
--- a/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch
+++ b/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch
@@ -28,7 +28,7 @@ index a4dc126..b61fa7a 100755
+++ b/easel/devkit/esl-dependencies
@@ -13,8 +13,8 @@
# SRE, Mon Jun 11 11:15:31 2007
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.5 2012/06/28 16:39:03 jlec Exp $
-require "getopts.pl"
-&Getopts('1afr');
@@ -43,7 +43,7 @@ index af3adf6..0cdb458 100755
+++ b/easel/devkit/sqc
@@ -205,12 +205,11 @@
# SRE, Tue Aug 6 11:16:39 2002
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.5 2012/06/28 16:39:03 jlec Exp $
-require "getopts.pl";
-require "importenv.pl";
@@ -74,7 +74,7 @@ index 9c77791..024ed34
@@ -16,9 +16,9 @@
#
# SRE, Thu Mar 1 19:22:57 2007 (Janelia)
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.5 2012/06/28 16:39:03 jlec Exp $
-require "getopts.pl";
+use Getopt::Std;
$have_sloccount = 1;
@@ -89,7 +89,7 @@ index 757854d..a9a8902 100755
+++ b/easel/testsuite/driver_report.pl
@@ -25,8 +25,8 @@
# SRE, Fri Mar 2 10:01:44 2007 (Janelia)
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.5 2012/06/28 16:39:03 jlec Exp $
-require "getopts.pl";
-&Getopts('c');
@@ -107,7 +107,7 @@ index 186a392..07026a0
@@ -10,8 +10,8 @@
#
# SRE, Fri Mar 2 08:37:48 2007 [Janelia]
- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.4 2012/06/28 16:38:29 jlec Exp $
+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.5 2012/06/28 16:39:03 jlec Exp $
-require "getopts.pl";
-&Getopts('c');
+use Getopt::Std;