diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2010-06-28 20:30:00 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2010-06-28 20:30:00 +0000 |
| commit | be6ada4fac4f2d1bfb1fbcdfa63b9685b99b5795 (patch) | |
| tree | 087122f8669c7f245fe73787460915f8b3bb7954 /sci-biology/muscle/muscle-3.7-r1.ebuild | |
| parent | Automated update of use.local.desc (diff) | |
| download | gentoo-2-be6ada4fac4f2d1bfb1fbcdfa63b9685b99b5795.tar.gz gentoo-2-be6ada4fac4f2d1bfb1fbcdfa63b9685b99b5795.tar.bz2 gentoo-2-be6ada4fac4f2d1bfb1fbcdfa63b9685b99b5795.zip | |
Fix for bufferoverflow, #309341
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/muscle/muscle-3.7-r1.ebuild')
| -rw-r--r-- | sci-biology/muscle/muscle-3.7-r1.ebuild | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/muscle/muscle-3.7-r1.ebuild b/sci-biology/muscle/muscle-3.7-r1.ebuild new file mode 100644 index 000000000000..e2b1b7ca4b0c --- /dev/null +++ b/sci-biology/muscle/muscle-3.7-r1.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.7-r1.ebuild,v 1.1 2010/06/28 20:30:00 jlec Exp $ + +EAPI="3" + +inherit eutils toolchain-funcs + +MY_P="${PN}${PV}_src" +DESCRIPTION="Multiple sequence comparison by log-expectation" +HOMEPAGE="http://www.drive5.com/muscle/" +SRC_URI="http://www.drive5.com/muscle/downloads${PV}/${MY_P}.tar.gz" + +LICENSE="public-domain" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="" + +RDEPEND="!sci-libs/libmuscle" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_prepare() { + epatch"${FILESDIR}"/${PV}-bufferoverflow.patch + sed -i \ + "s:-static::g" \ + "${S}/Makefile" + sed -i \ + "/strip/d" \ + "${S}/Makefile" +} + +src_compile() { + emake \ + GPP="$(tc-getCXX)" \ + CFLAGS="${CXXFLAGS}" \ + || die "make failed" +} + +src_install() { + dobin muscle || die +} |