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| author |   Markus Dittrich <markusle@gentoo.org> | 2008-04-20 11:11:20 +0000 |
|---|---|---|
| committer | Markus Dittrich <markusle@gentoo.org> | 2008-04-20 11:11:20 +0000 |
| commit | 0d9c961e6c2acdb89c9c11c14eb5a2d04aaed35d (patch) | |
| tree | a3dd3d56cf71318eeb8417cb0778e81350837754 /sci-biology/paml | |
| parent | alpha/ia64/sparc/x86 stable (diff) | |
| download | gentoo-2-0d9c961e6c2acdb89c9c11c14eb5a2d04aaed35d.tar.gz gentoo-2-0d9c961e6c2acdb89c9c11c14eb5a2d04aaed35d.tar.bz2 gentoo-2-0d9c961e6c2acdb89c9c11c14eb5a2d04aaed35d.zip | |
Version bump (fixes bug #218232).
(Portage version: 2.1.5_rc3)
Diffstat (limited to 'sci-biology/paml')
| -rw-r--r-- | sci-biology/paml/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/paml/paml-4a.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/paml/paml-4b.ebuild | 40 |
3 files changed, 49 insertions, 4 deletions
diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog index c2a2b9967f02..76b367db7884 100644 --- a/sci-biology/paml/ChangeLog +++ b/sci-biology/paml/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/paml -# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.2 2007/11/22 13:26:59 markusle Exp $ +# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.3 2008/04/20 11:11:20 markusle Exp $ + +*paml-4b (20 Apr 2008) + + 20 Apr 2008; Markus Dittrich <markusle@gentoo.org> +paml-4b.ebuild: + Version bump (fixes bug #218232). *paml-4a (22 Nov 2007) diff --git a/sci-biology/paml/paml-4a.ebuild b/sci-biology/paml/paml-4a.ebuild index ded1fad3745c..a47b92d6794e 100644 --- a/sci-biology/paml/paml-4a.ebuild +++ b/sci-biology/paml/paml-4a.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2007 Gentoo Foundation +# Copyright 1999-2008 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4a.ebuild,v 1.1 2007/11/22 13:26:59 markusle Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4a.ebuild,v 1.2 2008/04/20 11:11:20 markusle Exp $ inherit toolchain-funcs diff --git a/sci-biology/paml/paml-4b.ebuild b/sci-biology/paml/paml-4b.ebuild new file mode 100644 index 000000000000..58aab90bf711 --- /dev/null +++ b/sci-biology/paml/paml-4b.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4b.ebuild,v 1.1 2008/04/20 11:11:20 markusle Exp $ + +inherit toolchain-funcs + +MY_PV="${PV:0:1}" +MY_P="${PN}${MY_PV}" +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" +RDEPEND="" +DEPEND="${RDEPEND}" +S="${WORKDIR}/${MY_P}" + +src_compile() { + cd src + emake \ + -f Makefile.UNIX \ + CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" \ + || die "make failed" +} + +src_install() { + pushd "${S}"/src + dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 + popd + dodoc README.txt doc/* + insinto /usr/share/${PN}/control + doins *.ctl || die "Failed to install control files" + insinto /usr/share/${PN}/dat + doins stewart* *.dat dat/* || die "Failed to install data files" + insinto /usr/share/${PN} + doins -r examples/ || die "Failed to install examples" +} |