Version Bump, 338199

(Portage version: 2.2_rc88/cvs/Linux x86_64)

1 files changed, 66 insertions, 0 deletions

diff --git a/sci-biology/t-coffee/t-coffee-8.93.ebuild b/sci-biology/t-coffee/t-coffee-8.93.ebuild
new file mode 100644
index 000000000000..90a0f33bc8c9
--- /dev/null
+++ b/sci-biology/t-coffee/t-coffee-8.93.ebuild
@@ -0,0 +1,66 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-8.93.ebuild,v 1.1 2010/10/03 11:11:56 jlec Exp $
+
+EAPI="2"
+
+inherit flag-o-matic toolchain-funcs
+
+DESCRIPTION="A multiple sequence alignment package"
+HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
+SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="examples test"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+
+RDEPEND="sci-biology/clustalw"
+DEPEND="${DEPEND}
+	test? ( dev-lang/perl )"
+
+S="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
+
+die_compile() {
+	echo
+	eerror "If you experience an internal compiler error (consult the above"
+	eerror "messages), try compiling t-coffee using very modest compiler flags."
+	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
+	die "Compilation failed"
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/8.69-flags.patch
+	epatch "${FILESDIR}"/8.69-test.patch
+}
+
+src_compile() {
+	[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
+	[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
+	emake \
+		CC="$(tc-getCC)" CFLAGS="${CFLAGS}" \
+		-C t_coffee_source || die_compile
+}
+
+src_test() {
+	cd "${TCDIR}"
+	perl bin/test.pl || die
+}
+
+src_install() {
+	dobin t_coffee_source/t_coffee || die "Failed to install program."
+
+#	insinto /usr/share/${PN}/lib/html
+#	doins html/* || die "Failed to install Web interface files."
+
+	dodoc doc/*.txt || die "Failed to install text documentation."
+	dohtml doc/*.htm || die "Failed to install HTML documentation."
+
+	insinto /usr/share/doc/${PF}
+	doins doc/*.doc || die "Failed to install DOC documentation."
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r example || die "Failed to install example files."
+	fi
+}