New package, ebuild written by me

(Portage version: 2.2_rc30/cvs/Linux x86_64)

3 files changed, 59 insertions, 0 deletions

diff --git a/sci-biology/velvet/ChangeLog b/sci-biology/velvet/ChangeLog
new file mode 100644
index 000000000000..705ee8914c49
--- /dev/null
+++ b/sci-biology/velvet/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/velvet
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.1 2009/06/05 10:06:43 weaver Exp $
+
+*velvet-0.7.31 (05 Jun 2009)
+
+  05 Jun 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+  +velvet-0.7.31.ebuild:
+  New package, ebuild written by me
+
diff --git a/sci-biology/velvet/metadata.xml b/sci-biology/velvet/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/velvet/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/velvet/velvet-0.7.31.ebuild b/sci-biology/velvet/velvet-0.7.31.ebuild
new file mode 100644
index 000000000000..71e80531fd29
--- /dev/null
+++ b/sci-biology/velvet/velvet-0.7.31.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.31.ebuild,v 1.1 2009/06/05 10:06:43 weaver Exp $
+
+EAPI="2"
+
+MY_P="${PN}_${PV}"
+
+DESCRIPTION="A sequence assembler for very short reads"
+HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
+SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	rm -rf "${S}"/third-party/zlib*
+	sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
+		-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
+		-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
+		"${S}"/Makefile || die
+	sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
+}
+
+src_compile() {
+	emake -j1 || die
+	emake -j1 color || die
+}
+
+src_install() {
+	dobin velvet{g,h,g_de,h_de} third-party/layout/graph2.py third-party/afg_handling/*.pl || die
+	dodoc Manual.pdf CREDITS.txt
+}