Initial import

(Portage version: 2.1.10.63/cvs/Linux x86_64)

1 files changed, 157 insertions, 0 deletions

diff --git a/sci-libs/shogun/shogun-1.1.0.ebuild b/sci-libs/shogun/shogun-1.1.0.ebuild
new file mode 100644
index 000000000000..1a99992e76dc
--- /dev/null
+++ b/sci-libs/shogun/shogun-1.1.0.ebuild
@@ -0,0 +1,157 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/shogun/shogun-1.1.0.ebuild,v 1.1 2012/06/14 17:16:03 bicatali Exp $
+
+EAPI=4
+
+inherit multilib versionator toolchain-funcs java-pkg-opt-2
+
+MYPV=$(get_version_component_range 1-2)
+MYPD=${PN}-data-0.3
+
+DESCRIPTION="Large Scale Machine Learning Toolbox"
+HOMEPAGE="http://shogun-toolbox.org/"
+SRC_URI="ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2
+	test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )"
+
+LICENSE="GPL-3 free-noncomm"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="arpack bzip2 doc examples glpk gzip hdf5 json lapack lpsolve mono lua lzma
+	lzo java R ruby	octave python readline snappy static-libs superlu test xml"
+
+RDEPEND="sci-libs/gsl
+	sys-libs/zlib
+	arpack? ( sci-libs/arpack )
+	bzip2? ( app-arch/bzip2 )
+	glpk? ( sci-mathematics/glpk )
+	gzip? ( app-arch/gzip )
+	hdf5? ( sci-libs/hdf5 )
+	java? ( >=virtual/jdk-1.5 )
+	json? ( dev-libs/json-c )
+	lapack? ( virtual/cblas virtual/lapack )
+	lpsolve? ( sci-mathematics/lpsolve )
+	lua? ( dev-lang/lua )
+	lzo? ( dev-libs/lzo )
+	mono? ( dev-lang/mono )
+	octave? ( sci-mathematics/octave[hdf5=] )
+	python? ( dev-python/numpy )
+	R? ( dev-lang/R )
+	readline? ( sys-libs/readline )
+	ruby? ( >=dev-ruby/narray-0.6.0.1-r2 )
+	snappy? ( app-arch/snappy )
+	superlu? ( sci-libs/superlu )
+	xml? ( dev-libs/libxml2 )"
+
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? ( app-doc/doxygen[dot] )
+	java? ( dev-lang/swig dev-java/ant )
+	octave? ( dev-lang/swig )
+	python? ( dev-lang/swig test? ( sci-libs/scipy ) )
+	ruby? ( dev-lang/swig )"
+
+S="${WORKDIR}/${P}/src"
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${P}-respect-ldflags.patch \
+		"${FILESDIR}"/${P}-test-snappy.patch \
+		"${FILESDIR}"/${P}-test-readline.patch
+
+	# dist-packages is only for debian
+	# remove exagarated optimizations (-O9 does not exist...)
+	# use gentoo lapack framework
+	sed -i \
+		-e 's/dist-packages/site-packages/g' \
+		-e '/^COMP_OPTS=/d' \
+		-e "s/-llapack -lcblas/$(pkg-config --libs cblas lapack)/g" \
+		configure || die
+
+	# disable ldconfig which violates sandbox
+	# install in gentoo java standard paths
+	sed -i \
+		-e '/ldconfig/d' \
+		-e '/share\/java/d' \
+		-e '/jni/d' \
+		Makefile.template || die
+}
+
+src_configure() {
+	# define interfaces to shogun library to build
+	local x iface
+	for x in java lua octave python ruby ; do
+		use ${x} && iface="${iface}${x}_modular,"
+	done
+	use mono &&	iface="${iface}csharp_modular,"
+	use R && iface="${iface}r_modular,"
+	if use static-libs; then
+		iface="${iface}cmdline_static,"
+		use octave && iface="${iface}octave_static,"
+		use python && iface="${iface}python_static,"
+		use R && iface="${iface}r_static,"
+		use octave && use python && use R && iface="${iface}elwms_static,"
+	fi
+	iface="${iface%,}"
+
+	# gentoo bug #302621
+	use hdf5 && has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc
+
+	./configure \
+		--disable-cpudetection \
+		--destdir="${ED}" \
+		--prefix="${EPREFIX}/usr" \
+		--mandir="${EPREFIX}/usr/share/man" \
+		--libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--cc="$(tc-getCC)" \
+		--cxx="$(tc-getCXX)" \
+		--target="${CTARGET}" \
+		--interfaces=${iface} \
+		$(use_enable arpack) \
+		$(use_enable bzip2) \
+		$(use_enable doc doxygen) \
+		$(use_enable glpk) \
+		$(use_enable gzip) \
+		$(use_enable hdf5) \
+		$(use_enable json) \
+		$(use_enable lapack) \
+		$(use_enable lpsolve) \
+		$(use_enable lzma) \
+		$(use_enable lzo) \
+		$(use_enable readline) \
+		$(use_enable snappy) \
+		$(use_enable static-libs static) \
+		$(use_enable superlu) \
+		$(use_enable xml)
+}
+
+src_compile() {
+	emake
+	use doc && emake -C ../doc
+}
+
+src_test() {
+	use lapack || return
+	ln -s ../../${MYPD}/* ../data/
+	emake DESTDIR="${D}" install
+	# disable because very long and buggy dynamic paths (assumed install)
+	# emake tests
+	emake -C shogun check-examples
+}
+
+src_install() {
+	default
+	use static-libs || rm -f "${ED}"/usr/$(get_libdir)/*.a
+	if use java; then
+		java-pkg_dojar interfaces/java_modular/shogun.jar
+		java-pkg_doso interfaces/java_modular/libmodshogun.so
+	fi
+
+	use doc && dohtml -r ../doc/html/*
+	if use examples; then
+		insinto /usr/share/doc/${PF}
+		emake -C ../examples clean
+		doins -r ../examples
+		newins -r ../../${MYPD} data
+	fi
+}