New package: sci-mathematics/frobby imported from science overlay.

Fixes bug 294503

(Portage version: 2.1.9.24/cvs/Linux i686)

3 files changed, 115 insertions, 0 deletions

diff --git a/sci-mathematics/frobby/files/frobby-cflags-no-strip.patch b/sci-mathematics/frobby/files/frobby-cflags-no-strip.patch
new file mode 100644
index 000000000000..a3d2337c1eb0
--- /dev/null
+++ b/sci-mathematics/frobby/files/frobby-cflags-no-strip.patch
@@ -0,0 +1,20 @@
+--- Makefile.orig	2009-12-17 13:49:58.000000000 +0100
++++ Makefile	2009-12-17 13:50:25.000000000 +0100
+@@ -77,7 +77,6 @@
+ MATCH=false
+ ifeq ($(MODE), release)
+   outdir = bin/release/
+-  cflags += -O2
+   MATCH=true
+ endif
+ ifeq ($(MODE), debug)
+@@ -190,9 +189,6 @@
+       mv -f $@.exe $@; \
+ 	fi
+ endif
+-ifeq ($(MODE), release)
+-	strip $@
+-endif
+ 
+ # Link object files into library
+ library: bin/$(library)
diff --git a/sci-mathematics/frobby/files/frobby-latex.patch b/sci-mathematics/frobby/files/frobby-latex.patch
new file mode 100644
index 000000000000..546841fe03cd
--- /dev/null
+++ b/sci-mathematics/frobby/files/frobby-latex.patch
@@ -0,0 +1,21 @@
+--- Makefile	2009-07-07 05:40:18.000000000 +0200
++++ Makefile.docfix	2009-11-25 00:47:33.000000000 +0100
+@@ -241,15 +241,15 @@
+ docPs:
+ 	rm -rf bin/doc
+ 	mkdir bin/doc
+-	for i in 1 2 3; do latex doc/manual.tex -output-directory=bin/doc/; done
++	for i in 1 2 3; do latex -output-directory=bin/doc/ doc/manual.tex; done
+ 	cd bin; dvips doc/manual.dvi
+ docPdf:
+ 	rm -rf bin/doc
+ 	mkdir bin/doc
+-	for i in 1 2 3; do pdflatex doc/manual.tex -output-directory=bin/doc/; done
++	for i in 1 2 3; do pdflatex -output-directory=bin/doc/ doc/manual.tex; done
+ 	mv bin/doc/manual.pdf bin
+ docDviOnce: # Useful to view changes when writing the manual
+-	latex doc/manual.tex -output-directory=bin/doc
++	latex -output-directory=bin/doc doc/manual.tex 
+ 
+ # It may seem wasteful to run doxygen three times to generate three
+ # kinds of output. However, the latex output for creating a pdf file
diff --git a/sci-mathematics/frobby/files/frobby-useless-checks.patch b/sci-mathematics/frobby/files/frobby-useless-checks.patch
new file mode 100644
index 000000000000..2c0dc08a901b
--- /dev/null
+++ b/sci-mathematics/frobby/files/frobby-useless-checks.patch
@@ -0,0 +1,74 @@
+diff -ur --exclude=configure /Users/dan/src/M2-1.3/BUILD/dan/builds.tmp/mac64.production/libraries/frobby/tmp/frobby_v0.8.2/src/DebugAllocator.cpp frobby_v0.8.2/src/DebugAllocator.cpp
+--- /Users/dan/src/M2-1.3/BUILD/dan/builds.tmp/mac64.production/libraries/frobby/tmp/frobby_v0.8.2/src/DebugAllocator.cpp	2009-07-06 22:40:18.000000000 -0500
++++ frobby_v0.8.2/src/DebugAllocator.cpp	2009-10-20 16:58:39.000000000 -0500
+@@ -40,6 +40,7 @@
+ 	  reportError("Could not open file \"" + _inputFile + "\" for input.");
+ }
+ 
++#if 0
+ /** @todo consider off-by-one conditions on the allocation limit
+ 	conditions in this method.
+ 
+@@ -197,6 +198,8 @@
+   _limitAllocation = false;
+ }
+ 
++#endif
++
+ void* DebugAllocator::allocate(size_t size) {
+   return allocate(size, 0, 0);
+ }
+diff -ur --exclude=configure /Users/dan/src/M2-1.3/BUILD/dan/builds.tmp/mac64.production/libraries/frobby/tmp/frobby_v0.8.2/src/test/TestSuite.cpp frobby_v0.8.2/src/test/TestSuite.cpp
+--- /Users/dan/src/M2-1.3/BUILD/dan/builds.tmp/mac64.production/libraries/frobby/tmp/frobby_v0.8.2/src/test/TestSuite.cpp	2009-07-06 22:40:18.000000000 -0500
++++ frobby_v0.8.2/src/test/TestSuite.cpp	2009-10-20 16:58:39.000000000 -0500
+@@ -15,6 +15,7 @@
+    along with this program.  If not, see http://www.gnu.org/licenses/.
+ */
+ #include "stdinc.h"
++#include <algorithm>
+ #include "TestSuite.h"
+ 
+ #include "TestVisitor.h"
+@@ -40,7 +41,7 @@
+ }
+ 
+ void TestSuite::sortTests() {
+-  sort(begin(), end(), comparePointedToValue);
++  std::sort(begin(), end(), comparePointedToValue);
+ }
+ 
+ TestSuite::TestIterator TestSuite::begin() {
+diff -ur --exclude=configure /Users/dan/src/M2-1.3/BUILD/dan/builds.tmp/mac64.production/libraries/frobby/tmp/frobby_v0.8.2/test/error/help-noparam.err frobby_v0.8.2/test/error/help-noparam.err
+--- /Users/dan/src/M2-1.3/BUILD/dan/builds.tmp/mac64.production/libraries/frobby/tmp/frobby_v0.8.2/test/error/help-noparam.err	2009-07-06 22:40:19.000000000 -0500
++++ frobby_v0.8.2/test/error/help-noparam.err	2009-10-20 16:58:39.000000000 -0500
+@@ -1,4 +1,4 @@
+-Frobby version 0.8.1 Copyright (C) 2007 Bjarke Hammersholt Roune
++Frobby version 0.8.2 Copyright (C) 2007 Bjarke Hammersholt Roune
+ Frobby performs a number of computations related to monomial ideals. You
+ run it by typing `frobby ACTION', where ACTION is one of the following.
+ 
+diff -ur --exclude=configure /Users/dan/src/M2-1.3/BUILD/dan/builds.tmp/mac64.production/libraries/frobby/tmp/frobby_v0.8.2/test/error/runtests frobby_v0.8.2/test/error/runtests
+--- /Users/dan/src/M2-1.3/BUILD/dan/builds.tmp/mac64.production/libraries/frobby/tmp/frobby_v0.8.2/test/error/runtests	2009-07-06 22:40:19.000000000 -0500
++++ frobby_v0.8.2/test/error/runtests	2009-10-20 16:59:53.000000000 -0500
+@@ -85,8 +85,8 @@
+ $t latformat "blah" latformat-unknownOutput $* -oformat unknownFormat
+ if [ $? != 0 ]; then exit 1; fi
+ 
+-$t genideal "blah" genideal-tooLargeBoard $* -type king -varCount 100000
+-if [ $? != 0 ]; then exit 1; fi
++# $t genideal "blah" genideal-tooLargeBoard $* -type king -varCount 100000
++# if [ $? != 0 ]; then exit 1; fi
+ 
+ 
+ #######################################
+@@ -203,8 +203,8 @@
+ $t transform "1 1" 4ti2-noInteger $* -iformat 4ti2
+ if [ $? != 0 ]; then exit 1; fi
+ 
+-$t transform "1 1234567890123456" 4ti2-tooLarge $* -iformat 4ti2
+-if [ $? != 0 ]; then exit 1; fi
++# $t transform "1 1234567890123456" 4ti2-tooLarge $* -iformat 4ti2
++# if [ $? != 0 ]; then exit 1; fi
+ 
+ $t hilbert "R=QQ[a];I=monomialIdeal(" m2-noIdentifier $* -iformat m2
+ if [ $? != 0 ]; then exit 1; fi