diff options
| -rw-r--r-- | sci-biology/embassy-mse/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/embassy-mse/files/embassy-mse-3.0.0.650_fix-build-system.patch | 74 |
2 files changed, 50 insertions, 30 deletions
diff --git a/sci-biology/embassy-mse/ChangeLog b/sci-biology/embassy-mse/ChangeLog index 3e2233894889..ed526bcdb519 100644 --- a/sci-biology/embassy-mse/ChangeLog +++ b/sci-biology/embassy-mse/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/embassy-mse # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.41 2015/03/28 17:59:49 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.42 2015/06/21 09:10:58 jlec Exp $ + + 21 Jun 2015; Justin Lecher <jlec@gentoo.org> + files/embassy-mse-3.0.0.650_fix-build-system.patch: + Update buildsystem for latest plplot, bug #552492 28 Mar 2015; Justin Lecher <jlec@gentoo.org> -embassy-mse-1.0.0-r7.ebuild, embassy-mse-3.0.0.650.ebuild: diff --git a/sci-biology/embassy-mse/files/embassy-mse-3.0.0.650_fix-build-system.patch b/sci-biology/embassy-mse/files/embassy-mse-3.0.0.650_fix-build-system.patch index 8b2f0574e3b0..c1095b266d60 100644 --- a/sci-biology/embassy-mse/files/embassy-mse-3.0.0.650_fix-build-system.patch +++ b/sci-biology/embassy-mse/files/embassy-mse-3.0.0.650_fix-build-system.patch @@ -1,6 +1,27 @@ ---- MSE-3.0.0.650/configure.ac -+++ MSE-3.0.0.650/configure.ac -@@ -635,33 +635,6 @@ + ckit/Makefile.am | 2 +- + configure.ac | 67 +++++++++++--------------------------------------- + emboss_acd/Makefile.am | 2 +- + src/Makefile.am | 6 ++--- + 4 files changed, 18 insertions(+), 59 deletions(-) + +diff --git a/ckit/Makefile.am b/ckit/Makefile.am +index f87b131..a670d2b 100644 +--- a/ckit/Makefile.am ++++ b/ckit/Makefile.am +@@ -2,7 +2,7 @@ + + lib_LTLIBRARIES = libckit.la + +-AM_CPPFLAGS = -I../h ++AM_CPPFLAGS = -I$(top_srcdir)/h + + CKITSRC = datafiles.c next.c seqentry.c strings.c gcg.c pir.c \ + seqspec.c ttyinterface.c nextseqentry.c \ +diff --git a/configure.ac b/configure.ac +index a20d488..eb208bf 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -635,33 +635,6 @@ AS_CASE([${host_os}], @@ -34,7 +55,7 @@ dnl FIXME: This does no longer seem required with Autoconf 2.67? dnl Intel MacOSX 10.6 puts X11 in a non-standard place dnl AS_IF([test "x${with_x}" != "xno"], -@@ -737,21 +710,6 @@ +@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL @@ -56,19 +77,21 @@ dnl Test if --enable-localforce given locallink="no" embprefix="/usr/local" -@@ -874,6 +832,11 @@ +@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs], AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) +AS_IF([test "x${enable_systemlibs}" = "xyes"], +[ +dnl using system libraries -+ PKG_CHECK_MODULES([PLPLOT], [plplotd]) ++ PKG_CHECK_MODULES([PLPLOT], [plplotd], ++ [],[PKG_CHECK_MODULES([PLPLOT], [plplot])] ++ ) +]) # Enable the purify tool: --enable-purify, sets CC and LIBTOOL -@@ -1000,17 +963,13 @@ +@@ -1000,17 +965,13 @@ AS_IF([test "x${enable_savestats}" = "xyes"], @@ -93,9 +116,20 @@ ---- MSE-3.0.0.650/src/Makefile.am -+++ MSE-3.0.0.650/src/Makefile.am -@@ -18,9 +18,7 @@ +diff --git a/emboss_acd/Makefile.am b/emboss_acd/Makefile.am +index e1c1878..e253c95 100644 +--- a/emboss_acd/Makefile.am ++++ b/emboss_acd/Makefile.am +@@ -1,3 +1,3 @@ + +-pkgdata_DATA = *.acd ++pkgdata_DATA = $(srcdir)/*.acd + pkgdatadir=$(prefix)/share/EMBOSS/acd +diff --git a/src/Makefile.am b/src/Makefile.am +index b44632a..84e89b5 100644 +--- a/src/Makefile.am ++++ b/src/Makefile.am +@@ -18,9 +18,7 @@ AM_CPPFLAGS = -I../h \ -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ -I../../../ajax/acd -I../../../plplot else @@ -106,28 +140,10 @@ endif if ISSHARED -@@ -60,5 +58,5 @@ +@@ -60,5 +58,5 @@ LDADD = ../ckit/libckit.la \ $(XLIB) else LDADD = ../ckit/libckit.la -L${embprefix}/lib -lnucleus -lacd -lajaxdb \ - -lensembl -lajaxg -lajax -lepcre $(NLADD) -leplplot $(XLIB) + -lensembl -lajaxg -lajax $(NLADD) $(NCURSES_LIBS) $(XLIB) endif ---- MSE-3.0.0.650/ckit/Makefile.am -+++ MSE-3.0.0.650/ckit/Makefile.am -@@ -2,7 +2,7 @@ - - lib_LTLIBRARIES = libckit.la - --AM_CPPFLAGS = -I../h -+AM_CPPFLAGS = -I$(top_srcdir)/h - - CKITSRC = datafiles.c next.c seqentry.c strings.c gcg.c pir.c \ - seqspec.c ttyinterface.c nextseqentry.c \ ---- MSE-3.0.0.650/emboss_acd/Makefile.am -+++ MSE-3.0.0.650/emboss_acd/Makefile.am -@@ -1,3 +1,3 @@ - --pkgdata_DATA = *.acd -+pkgdata_DATA = $(srcdir)/*.acd - pkgdatadir=$(prefix)/share/EMBOSS/acd |