diff options
Diffstat (limited to 'sci-biology/abyss/abyss-1.3.4.ebuild')
| -rw-r--r-- | sci-biology/abyss/abyss-1.3.4.ebuild | 21 |
1 files changed, 13 insertions, 8 deletions
diff --git a/sci-biology/abyss/abyss-1.3.4.ebuild b/sci-biology/abyss/abyss-1.3.4.ebuild index 6ce67798ca99..3e8e7fa36f4e 100644 --- a/sci-biology/abyss/abyss-1.3.4.ebuild +++ b/sci-biology/abyss/abyss-1.3.4.ebuild @@ -1,10 +1,12 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.4.ebuild,v 1.1 2012/06/20 20:48:56 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.4.ebuild,v 1.2 2013/07/17 07:32:04 jlec Exp $ -EAPI="4" +EAPI=5 -inherit autotools eutils +AUTOTOOLS_AUTORECONF=true + +inherit autotools-utils DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" @@ -23,15 +25,18 @@ RDEPEND="${DEPEND}" # todo: --enable-maxk=N configure option # todo: fix automagic mpi toggling +PATCHES=( "${FILESDIR}"/${P}-gcc-4.7.patch ) + src_prepare() { - epatch "${FILESDIR}"/${P}-gcc-4.7.patch sed -i -e "s/-Werror//" configure.ac || die #365195 sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die - eautoreconf + autotools-utils_src_prepare } src_configure() { - econf \ - --docdir="${EPREFIX}/usr/share/doc/${PF}" \ + local myeconfargs=( + --docdir="${EPREFIX}/usr/share/doc/${PF}" $(use_enable openmp) + ) + autotools-utils_src_configure } |