diff options
Diffstat (limited to 'sci-biology/gatk/gatk-1.5.ebuild')
| -rw-r--r-- | sci-biology/gatk/gatk-1.5.ebuild | 44 |
1 files changed, 0 insertions, 44 deletions
diff --git a/sci-biology/gatk/gatk-1.5.ebuild b/sci-biology/gatk/gatk-1.5.ebuild deleted file mode 100644 index e1ee4da5d921..000000000000 --- a/sci-biology/gatk/gatk-1.5.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2012 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-1.5.ebuild,v 1.1 2012/04/07 23:32:18 weaver Exp $ - -EAPI=4 - -MY_HASH=c981d24 - -EGIT_REPO_URI="https://github.com/broadgsa/gatk.git" - -EANT_BUILD_TARGET="dist" -EANT_NEEDS_TOOLS="true" -JAVA_ANT_REWRITE_CLASSPATH="true" - -#inherit java-pkg-2 java-ant-2 git -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="The Genome Analysis Toolkit" -HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" -SRC_URI="https://github.com/broadgsa/gatk/tarball/${PV} -> ${P}.tar.gz" - -LICENSE="as-is" -SLOT="0" -IUSE="" -KEYWORDS="~amd64" - -COMMON_DEPS="" -DEPEND=">=virtual/jdk-1.6 - ${COMMON_DEPS}" -RDEPEND=">=virtual/jre-1.6 - ${COMMON_DEPS}" - -S="${WORKDIR}/broadgsa-gatk-${MY_HASH}" - -src_prepare() { - sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die - java-pkg-2_src_prepare -} - -src_install() { - java-pkg_dojar dist/*.jar - java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar - java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar -} |