1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
|
# ChangeLog for sci-biology/biopython
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.82 2015/03/27 10:17:34 ago Exp $
27 Mar 2015; Agostino Sarubbo <ago@gentoo.org> biopython-1.65.ebuild:
Stable for x86, wrt bug #544544
27 Mar 2015; Agostino Sarubbo <ago@gentoo.org> biopython-1.65.ebuild:
Stable for amd64, wrt bug #544544
26 Mar 2015; Justin Lecher <jlec@gentoo.org>
+files/biopython-1.65-test-fix-backport.patch, biopython-1.65.ebuild:
Backport test fix
26 Mar 2015; Justin Lecher <jlec@gentoo.org> biopython-1.65.ebuild:
Add note for embos support, bug #543510
03 Mar 2015; Justin Lecher <jlec@gentoo.org> -biopython-1.58.ebuild,
-biopython-1.59.ebuild, -biopython-1.61.ebuild, -biopython-1.62-r1.ebuild,
-biopython-1.62.ebuild, -biopython-1.63-r1.ebuild, -biopython-1.63.ebuild,
biopython-1.64.ebuild:
Drop old
*biopython-1.65 (03 Mar 2015)
03 Mar 2015; Justin Lecher <jlec@gentoo.org> +biopython-1.65.ebuild:
Version Bump; add py3 and pypy support
*biopython-1.64 (03 Jun 2014)
03 Jun 2014; Justin Lecher <jlec@gentoo.org> +biopython-1.64.ebuild:
Version Bump, thanks Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> preparing
the ebuild
*biopython-1.63-r1 (07 May 2014)
07 May 2014; Justin Lecher <jlec@gentoo.org> +biopython-1.63-r1.ebuild,
+files/SffIO_broken_padding.patch, +files/SffIO_error_in_check_eof.patch:
Import changes from sci overlay
*biopython-1.63 (30 Jan 2014)
30 Jan 2014; Justin Lecher <jlec@gentoo.org> +biopython-1.63.ebuild:
Version BUmp
*biopython-1.62-r1 (29 Dec 2013)
29 Dec 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.62-r1.ebuild,
+files/biopython-1.62-SffIO.patch:
Add additional patch from Martin Mokrejš
*biopython-1.62 (17 Sep 2013)
17 Sep 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.62.ebuild:
Version Bump
02 Jul 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild:
Fix deps for python
06 Jun 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild:
Keyword ~-linux
*biopython-1.61 (26 Apr 2013)
26 Apr 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.61.ebuild,
metadata.xml:
Version Bump
14 Dec 2012; Ulrich Müller <ulm@gentoo.org> biopython-1.57.ebuild,
biopython-1.58.ebuild, biopython-1.59.ebuild:
Update LICENSE, HPND according to LICENSE file.
*biopython-1.59 (27 Feb 2012)
27 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.59.ebuild:
Version bump
26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild:
Version bump
*biopython-1.58 (26 Dec 2011)
26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild:
Version bump
23 Jun 2011; Markos Chandras <hwoarang@gentoo.org> -biopython-1.56.ebuild:
Remove old ebuilds. Requested by Arfrever
28 May 2011; Brent Baude <ranger@gentoo.org> biopython-1.57.ebuild:
Marking biopython-1.57 ppc for bug 365877
24 May 2011; Markus Meier <maekke@gentoo.org> biopython-1.57.ebuild:
x86 stable, bug #365877
06 May 2011; Justin Lecher <jlec@gentoo.org> biopython-1.56.ebuild,
biopython-1.57.ebuild:
Cleaned DESCRIPTION
05 May 2011; Markos Chandras <hwoarang@gentoo.org> biopython-1.57.ebuild:
Stable on amd64 wrt bug #365877
*biopython-1.57 (03 Apr 2011)
03 Apr 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
+biopython-1.57.ebuild:
Version bump.
30 Jan 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
-biopython-1.55.ebuild:
Delete.
30 Jan 2011; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild,
biopython-1.56.ebuild:
Drop alpha/sparc keywords
15 Jan 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org>
biopython-1.56.ebuild:
x86 stable wrt bug #351498
14 Jan 2011; Brent Baude <ranger@gentoo.org> biopython-1.56.ebuild:
stable ppc, bug 351498
13 Jan 2011; Markos Chandras <hwoarang@gentoo.org> biopython-1.56.ebuild:
Stable on amd64 wrt bug #351498
06 Jan 2011; Brent Baude <ranger@gentoo.org> biopython-1.55.ebuild:
Marking biopython-1.55 ppc for bug 341519
*biopython-1.56 (13 Dec 2010)
13 Dec 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
-biopython-1.53.ebuild, -biopython-1.54.ebuild, +biopython-1.56.ebuild:
Version bump.
31 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild:
alpha/sparc stable wrt #341519
21 Oct 2010; Thomas Kahle <tomka@gentoo.org> biopython-1.55.ebuild:
x86 stable per bug 341519
19 Oct 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.55.ebuild:
Stable on amd64 wrt bug #341519
15 Oct 2010; Brent Baude <ranger@gentoo.org> biopython-1.54.ebuild:
stable ppc, bug 327151
10 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.54.ebuild:
sparc stable wrt #327151
*biopython-1.55 (17 Sep 2010)
17 Sep 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
+biopython-1.55.ebuild:
Version bump.
12 Sep 2010; Tobias Klausmann <klausman@gentoo.org> biopython-1.54.ebuild:
Stable on alpha, bug #327151
12 Jul 2010; Christian Faulhammer <fauli@gentoo.org>
biopython-1.54.ebuild:
stable x86, bug 327151
06 Jul 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.54.ebuild:
Stable on amd64 wrt bug #327151
*biopython-1.54 (05 Jun 2010)
05 Jun 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
-biopython-1.49.ebuild, -files/biopython-1.49-flex.patch,
-biopython-1.51.ebuild, -biopython-1.52.ebuild, +biopython-1.54.ebuild:
Version bump.
13 Feb 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.53.ebuild:
alpha/sparc stable wrt #301964
07 Feb 2010; Markus Meier <maekke@gentoo.org> biopython-1.53.ebuild:
amd64/x86 stable, bug #301964
24 Jan 2010; Brent Baude <ranger@gentoo.org> biopython-1.53.ebuild:
stable ppc, bug 301964
*biopython-1.53 (21 Dec 2009)
21 Dec 2009; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
+biopython-1.53.ebuild:
Version bump. Set SUPPORT_PYTHON_ABIS.
31 Oct 2009; Markus Meier <maekke@gentoo.org> biopython-1.52.ebuild:
amd64/x86 stable, bug #290931
*biopython-1.52 (23 Sep 2009)
23 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.52.ebuild:
Version bump
*biopython-1.51 (09 Sep 2009)
09 Sep 2009; Andrey Kislyuk <weaver@gentoo.org>
+files/biopython-1.51-flex.patch, +biopython-1.51.ebuild:
Version bump
26 Aug 2009; Christian Faulhammer <fauli@gentoo.org> metadata.xml:
remove now unused flag description
26 Aug 2009; Christian Faulhammer <fauli@gentoo.org>
-biopython-1.42.ebuild, -files/biopython-1.43-buildkdtree.patch,
-biopython-1.44.ebuild, -files/biopython-1.44-sequtils-complement.patch,
-biopython-1.47.ebuild, -files/biopython-1.47-kdtree.patch:
clean up
26 Aug 2009; Tobias Klausmann <klausman@gentoo.org> biopython-1.49.ebuild:
Stable on alpha, bug #277822
02 Aug 2009; nixnut <nixnut@gentoo.org> biopython-1.49.ebuild:
ppc stable #277822
20 Jul 2009; Jeremy Olexa <darkside@gentoo.org> biopython-1.49.ebuild:
amd64 stable, bug 277822
17 Jul 2009; Ferris McCormick <fmccor@gentoo.org> biopython-1.49.ebuild:
Sparc stable --- bug #277822 --- ran tests successfully.
14 Jul 2009; Christian Faulhammer <fauli@gentoo.org>
biopython-1.49.ebuild:
stable x86, bug 277822
24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Giving up maintainership of this package.
*biopython-1.49 (16 Jan 2009)
16 Jan 2009; Olivier Fisette <ribosome@gentoo.org>
+files/biopython-1.49-flex.patch, +biopython-1.49.ebuild:
Version bump. Thanks to Juan Aguado <juantxorena@gmail.com> for his work.
Fixes bug #248799.
06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
Add USE flag description to metadata wrt GLEP 56.
14 Jul 2008; nixnut <nixnut@gentoo.org> biopython-1.44.ebuild:
Stable on ppc wrt bug 221159
07 Jul 2008; Raúl Porcel <armin76@gentoo.org> biopython-1.44.ebuild:
alpha/sparc/x86 stable wrt #221159
*biopython-1.47 (06 Jul 2008)
06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
+files/biopython-1.47-kdtree.patch, +biopython-1.47.ebuild:
New version. Better documentation installation. Added scripts and test
suite. KDTree now enabled by default (requires switching to EAPI 1).
06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> biopython-1.44.ebuild:
Stable on amd64.
30 Jan 2008; Olivier Fisette <ribosome@gentoo.org> biopython-1.42.ebuild,
biopython-1.44.ebuild:
Q.A.: Quoted variables.
30 Jan 2008; Olivier Fisette <ribosome@gentoo.org> -biopython-1.43.ebuild:
Removed buggy version (see bug #202602).
*biopython-1.44 (30 Jan 2008)
30 Jan 2008; Olivier Fisette <ribosome@gentoo.org>
+files/biopython-1.44-sequtils-complement.patch, +biopython-1.44.ebuild:
Fixed six_frame_translations function. Thanks to JTRiley
<justin.t.riley@gmail.com> for his patch. (Fixes bug #202606.)
*biopython-1.43 (17 May 2007)
17 May 2007; Olivier Fisette <ribosome@gentoo.org>
+files/biopython-1.43-buildkdtree.patch, -biopython-1.40b.ebuild,
+biopython-1.43.ebuild:
New upstream version. Ebuild clean-up. Pruned old version.
16 May 2007; Raúl Porcel <armin76@gentoo.org> biopython-1.42.ebuild:
alpha stable wrt #153774
05 Nov 2006; Christian Faulhammer <opfer@gentoo.org>
biopython-1.42.ebuild:
stabled x86, bug #153774
03 Nov 2006; <blubb@gentoo.org> biopython-1.42.ebuild:
stable on amd64
03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> -biopython-1.41.ebuild:
Pruned old version.
02 Nov 2006; nixnut <nixnut@gentoo.org> biopython-1.42.ebuild:
Stable on ppc wrt bug 153774
02 Nov 2006; Jason Wever <weeve@gentoo.org> biopython-1.42.ebuild:
Stable on SPARC wrt bug #153774.
14 Sep 2006; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
Taking over maintainership.
*biopython-1.42 (12 Sep 2006)
12 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +biopython-1.42.ebuild:
New upstream version.
19 Jan 2006; George Shapovalov <george@gentoo.org> +biopython-1.41.ebuild:
new version, cleaned up install
30 Aug 2005; Olivier Fisette <ribosome@gentoo.org> -biopython-1.24.ebuild,
-biopython-1.30.ebuild:
Removed obsolete versions.
12 Jun 2005; Bryan Østergaard <kloeri@gentoo.org> biopython-1.40b.ebuild:
Stable on alpha.
21 May 2005; Jason Wever <weeve@gentoo.org> biopython-1.40b.ebuild:
Stable on SPARC.
13 May 2005; Olivier Fisette <ribosome@gentoo.org> -biopython-1.10.ebuild,
-biopython-1.21.ebuild, -biopython-1.23.ebuild, biopython-1.40b.ebuild:
Removed obsolete versions. Added 1.40b to x86.
*biopython-1.40b (19 Feb 2005)
19 Feb 2005; Olivier Fisette <ribosome@gentoo.org>
+biopython-1.40b.ebuild:
New version. Should fix bug #82498.
29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
Change encoding to UTF-8 for GLEP 31 compliance
*biopython-1.23 (23 Dec 2004)
23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+biopython-1.10.ebuild, +biopython-1.21.ebuild, +biopython-1.23.ebuild,
+biopython-1.24.ebuild, +biopython-1.30.ebuild:
Moved from app-sci/biopython to sci-biology/biopython.
13 Dec 2004; Jason Wever <weeve@gentoo.org> biopython-1.24.ebuild:
Stable on sparc.
*biopython-1.30 (07 Oct 2004)
07 Oct 2004; George Shapovalvo <george@gentoo.org> biopython-1.30.ebuild :
new version (#51833)
amd64 has problems with KDTree, will try to look into this more later
05 May 2004; Bryan Østergaard <kloeri@gentoo.org> biopython-1.24.ebuild:
Stable on alpha.
03 Apr 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild:
Marked stable on x86
*biopython-1.24 (29 Feb 2004)
29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild :
version bump
*biopython-1.23 (30 Dec 2003)
29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.23.ebuild :
marked stable on x86
30 Dec 2003; George Shapovalvo <george@gentoo.org> biopython-1.23.ebuild :
new version, reworked to use distutils. Thanks to
Peter Bienstman <Peter.Bienstman@rug.ac.be> for an update (#35727)
02 Sep 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild,
biopython-1.21.ebuild:
moved dev-python/Numeric to dev-python/numeric
*biopython-1.21 (08 Aug 2003)
08 Aug 2003; George Shapovalov <george@gentoo.org> biopython-1.21.ebuild :
new version, added few docs (#25428)
thanks to Daniel Jaeggi <daniel@jaeggi.co.uk> for notification
04 Jul 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild:
renamed reportlab dep
*biopython-1.10 (18 Feb 2003)
18 Feb 2003; George Shapovalov <george@gentoo.org> ChangeLog, biopython-1.10.ebuild, files/digest-biopython-1.10 :
initial release (#11617)
Biopython - python module for Computational Moelcular Biology
ebuild submitted by Daniel Jaeggi <daniel@jaeggi.co.uk>
|
GitWeb