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# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-151.ebuild,v 1.10 2011/04/06 13:46:56 jlec Exp $
DESCRIPTION="Codon usage tables calculated from GenBank"
HOMEPAGE="http://www.kazusa.or.jp/codon/"
SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
SLOT="0"
LICENSE="public-domain"
# Minimal build keeps only the indexed files (if applicable) and the
# documentation. The non-indexed database is not installed.
IUSE="emboss minimal"
KEYWORDS="amd64 ppc ppc64 x86"
DEPEND="emboss? ( sci-biology/emboss )"
RDEPEND="${DEPEND}"
S="${WORKDIR}"
RESTRICT="binchecks strip"
src_compile() {
if use emboss; then
mkdir CODONS
echo
einfo "Indexing CUTG for usage with EMBOSS."
EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
"Indexing CUTG failed."
echo
fi
}
src_install() {
if ! use minimal; then
mkdir -p "${D}"usr/share/${PN}
mv *.codon *.spsum "${D}"/usr/share/${PN} || die \
"Installing raw CUTG database failed."
fi
dodoc README
if use emboss; then
mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS
cd CODONS
for file in *; do
mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \
"Installing the EMBOSS-indexed database failed."
done
fi
}
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