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| author |   Horea Christian <chr@chymera.eu> | 2023-05-22 06:49:14 -0400 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2023-05-22 06:49:14 -0400 |
| commit | 5a899bba55649b682d4f3b3ebba06734fb7401e5 (patch) | |
| tree | e4c1b44ed8a7275a23edd0c4d440111ecb09c758 /sci-biology | |
| parent | sci-biology/bidsschematools: update SRC_URI (diff) | |
| download | sci-5a899bba55649b682d4f3b3ebba06734fb7401e5.tar.gz sci-5a899bba55649b682d4f3b3ebba06734fb7401e5.tar.bz2 sci-5a899bba55649b682d4f3b3ebba06734fb7401e5.zip | |
sci-biology/gemini: treeclean
Signed-off-by: Horea Christian <chr@chymera.eu>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/gemini/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/gemini/gemini-0.30.2.ebuild | 45 | ||||
| -rw-r--r-- | sci-biology/gemini/metadata.xml | 15 |
3 files changed, 0 insertions, 61 deletions
diff --git a/sci-biology/gemini/Manifest b/sci-biology/gemini/Manifest deleted file mode 100644 index e85205a03..000000000 --- a/sci-biology/gemini/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST gemini-0.30.2.tar.gz 1629220 BLAKE2B cbcbcb367817550d39f5385617fa577895d13a084ef2f7e8be2aa3895f9f22e9df2d453673993962819cdfa1705b1a8fa5f7f899d836f055eff753a7f6c5ae2f SHA512 08f88cc54631bc6f9fca72eaa996457dff1f19e4a5791b5ce11a2c2983e3ca23101aa572d2dcbd2fb1340d4e3ed1ea87d99e88530b25f2bfc533f879ac584b6d diff --git a/sci-biology/gemini/gemini-0.30.2.ebuild b/sci-biology/gemini/gemini-0.30.2.ebuild deleted file mode 100644 index 25ec22946..000000000 --- a/sci-biology/gemini/gemini-0.30.2.ebuild +++ /dev/null @@ -1,45 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..10} ) - -inherit distutils-r1 - -DESCRIPTION="Lightweight VCF to DB framework for disease and population genetics" -HOMEPAGE="https://github.com/arq5x/gemini - http://gemini.readthedocs.org/en/latest" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -RDEPEND=" - dev-python/bottle[${PYTHON_USEDEP}] - dev-python/cython[${PYTHON_USEDEP}] - dev-python/ipyparallel[${PYTHON_USEDEP}] - dev-python/jinja[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/numexpr[${PYTHON_USEDEP}] - dev-python/openpyxl[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/pyyaml[${PYTHON_USEDEP}] - dev-python/unidecode[${PYTHON_USEDEP}] - dev-python/sqlalchemy[${PYTHON_USEDEP}] - sci-biology/bx-python[${PYTHON_USEDEP}] - sci-libs/htslib - sci-biology/pybedtools[${PYTHON_USEDEP}] - sci-biology/pysam[${PYTHON_USEDEP}] -" - -distutils_enable_sphinx docs - -python_prepare_all() { - # this has been renamed in newer versions of sphinx - sed -i -e 's/sphinx.ext.pngmath/sphinx.ext.imgmath/g' docs/conf.py || die - - distutils-r1_python_prepare_all -} diff --git a/sci-biology/gemini/metadata.xml b/sci-biology/gemini/metadata.xml deleted file mode 100644 index 260a8b4ae..000000000 --- a/sci-biology/gemini/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">arq5x/gemini</remote-id> - </upstream> -</pkgmetadata> |