sci-libs/atlas: Version bump

(Portage version: 2.1.10.65/git/Linux x86_64, unsigned Manifest commit)

4 files changed, 8 insertions, 275 deletions

diff --git a/sci-libs/atlas/ChangeLog b/sci-libs/atlas/ChangeLog
index dcc677f14..19a8577cc 100644
--- a/sci-libs/atlas/ChangeLog
+++ b/sci-libs/atlas/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*atlas-3.9.79 (18 Jun 2012)
+
+  18 Jun 2012; Sébastien Fabbro <bicatali@gentoo.org> +atlas-3.9.79.ebuild,
+  -atlas-3.9.74.ebuild, -atlas-3.9.77.ebuild:
+  sci-libs/atlas: Version bump
+
 *atlas-3.9.77 (07 Jun 2012)
 
   07 Jun 2012; Sébastien Fabbro <bicatali@gentoo.org> -atlas-3.9.71.ebuild,
diff --git a/sci-libs/atlas/Manifest b/sci-libs/atlas/Manifest
index 5fc25e532..b2b780271 100644
--- a/sci-libs/atlas/Manifest
+++ b/sci-libs/atlas/Manifest
@@ -1,6 +1,4 @@
 DIST atlas3.8.4.tar.bz2 2534071 RMD160 fa2828468459213fcf3f1ae4fd26671ba32f4776 SHA1 ef92bcbc4bec096b34ed7a0d29119d84c973df0c SHA256 0f7720fb16fa4b8b8a192ea791e57569546db6f5f016cf3caaee30a9d94583bf
-DIST atlas3.9.74.tar.bz2 6342756 SHA256 2b3e9c7c6d9d8ee0119898f97a86ffa6c7841d0c00b4e3129b5536ac06b570cb SHA512 5b1f8585c4cb769381531cc6fb6a18b50ca7c9498ca9ea75a5f210ee6c76972be451b71a4b23006566a722d626e12d62d491105a857bf3fc655393028aa8a1f5 WHIRLPOOL d00e1b1c7d152785974ec14a68b84fe432355121e4de38e900c8e84a769ff41b40d7761406fd54c90eb11590f7c63ed1004e47f9285340f07b604e58c80e26d7
-DIST atlas3.9.77.tar.bz2 6354565 SHA256 0eeb6e97dba473da228e041425809193a1d885f99246c3d99a239ef2704bbfda SHA512 657ebea8ecadebd1cb60a26d0e961a70b6d0482859e0e7e75711d5acc2fd112493e1137380de930e6551ac9b0be764617ebceff0135474b18a8c0db08426936d WHIRLPOOL 0f72d8152e8f82b9163ba14affed262df0b77f42dfe901e9a79b6fc19b3c1157778a725637dba6b2ea90d336c1b78798301783d8f339ab5d9a215743ae24ede7
+DIST atlas3.9.79.tar.bz2 6358059 RMD160 b354d95de6073a7304aaf19fc85b512a8bbf9997 SHA1 1a0cba4a048a2796a932856b7d7b18d459a6e0da SHA256 126b35cee4741f15d6643cba49df019a1f8de945d33c1ae02cabea82efc07973 SHA512 7e3c29a7d4f4e4366bcdebf0176c82b50d0973f14c60ceeee1d08517234dc263bfd87f5356d154de171d44f0735e58b25c1a4129024d3351f3f77a08271ae1dc WHIRLPOOL 2656cb5d939efa2024f1430e60b3efa7c616f4e44ef1db8054069aa7c5d6bb9a2afceb2ba9665114e2516292f41f21e1366bec843f61bdb90c9af46369d0caee
 DIST lapack-3.3.1.tgz 4945204 SHA256 56821ab51c29369a34e5085728f92c549a9aa926f26acf7eeac87b61eed329e4 SHA512 67f6e9e0457101fdf41dd0ce8a692155ab45f26a8d94848c4c99597eab18497faa2c0fbd342d2ad11bc2818693b8decad4f3a63216bdc82901a7a79a8f4d4725 WHIRLPOOL 69c4a780dd396c2c0f22bb3b65be094228abd48877a0488c606a547e9046655bf6623918ae2756121fff244d46fe601599f8898cdc984524e8a80429b2e75414
-DIST lapack-3.4.0.tgz 6127787 SHA256 a7139ef97004d0e3c4c30f1c52d508fd7ae84b5fbaf0dd8e792c167dc306c3e9 SHA512 2dc4994d5d88ea08d5bfa6674c6e6b363cd5669140b201913796efc0fc06d372ced83820e90afe67a6efb4b6b06abb7e727e337c071cd4c0d67354a6b453fadf WHIRLPOOL feaf2429e91a8a65916564fc39594c29e8110fe410fc8e8490fb3ca7a8c4191cad435f85d4ad288510ff48e8b3ad680426c4e00a15488c37eb0f21be7399bcb7
-DIST lapack-3.4.1.tgz 6147915 SHA256 93b910f94f6091a2e71b59809c4db4a14655db527cfc5821ade2e8c8ab75380f SHA512 8bd6eedd42edac5e19f4101daa785f646feb7c0e24e66975e3a1cdb84d5e13445f79442fcd2cf0f29d6b823a5a778edaa1a52895e8aa15d9241356328eccec3f WHIRLPOOL 8974883990d4a636373c493f6eb55929b7021facf56df1d367a9516d15b3596c9e97e68b091e5d15e5fdcb70a8093dc281e334d7e32aec2567eae30db5b21b77
+DIST lapack-3.4.1.tgz 6147915 RMD160 3b715aff2924b47a45433376cfb9b66ffeeeb46d SHA1 c115223ac1bac9ab971aae865d3e95442bc979bc SHA256 93b910f94f6091a2e71b59809c4db4a14655db527cfc5821ade2e8c8ab75380f SHA512 8bd6eedd42edac5e19f4101daa785f646feb7c0e24e66975e3a1cdb84d5e13445f79442fcd2cf0f29d6b823a5a778edaa1a52895e8aa15d9241356328eccec3f WHIRLPOOL 8974883990d4a636373c493f6eb55929b7021facf56df1d367a9516d15b3596c9e97e68b091e5d15e5fdcb70a8093dc281e334d7e32aec2567eae30db5b21b77
diff --git a/sci-libs/atlas/atlas-3.9.74.ebuild b/sci-libs/atlas/atlas-3.9.74.ebuild
deleted file mode 100644
index b2a010ae2..000000000
--- a/sci-libs/atlas/atlas-3.9.74.ebuild
+++ /dev/null
@@ -1,271 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=4
-inherit eutils toolchain-funcs fortran-2 versionator alternatives-2
-
-LAPACKP=lapack-3.4.0.tgz
-
-DESCRIPTION="Automatically Tuned Linear Algebra Software"
-HOMEPAGE="http://math-atlas.sourceforge.net/"
-SRC_URI="mirror://sourceforge/math-atlas/${PN}${PV}.tar.bz2
-	fortran? ( lapack? ( http://www.netlib.org/lapack/${LAPACKP} ) )"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux"
-IUSE="fortran doc lapack static-libs threads"
-
-RDEPEND="fortran? ( virtual/fortran )"
-DEPEND="${RDEPEND}
-	!prefix? ( sys-power/cpufrequtils )"
-
-S="${WORKDIR}/ATLAS"
-
-pkg_setup() {
-	if [[ -n $(type -P cpufreq-info) ]]; then
-		[[ -z $(cpufreq-info -d) ]] && return
-		local ncpu=$(LANG=C cpufreq-info | grep -c "analyzing CPU")
-		local cpu=0
-		while [[ ${cpu} -lt ${ncpu} ]]; do
-			if ! $(LANG=C cpufreq-info -p -c ${cpu} | grep -q performance); then
-				ewarn "CPU $cpu is not set to performance"
-				ewarn "Run cpufreq-set -r -g performance as root"
-				die "${PN} needs all cpu set to performance"
-			fi
-			cpu=$(( cpu + 1 ))
-		done
-	else
-		ewarn "Please make sure to disable CPU throttling completely"
-		ewarn "during the compile of ${PN}. Otherwise, all ${PN}"
-		ewarn "generated timings will be completely random and the"
-		ewarn "performance of the resulting libraries will be degraded"
-		ewarn "considerably."
-	fi
-	use fortran && fortran-2_pkg_setup
-}
-
-src_prepare() {
-	epatch "${FILESDIR}"/3.9.39-bfr-overflow.patch
-	epatch "${FILESDIR}"/3.9.63-leaks.patch
-}
-
-src_configure() {
-	atlas_configure() {
-		# hack needed to trick the flaky gcc detection
-		local mycc="$(tc-getCC)"
-		[[ ${mycc} == *gcc* ]] && mycc=gcc
-
-		local myconf=(
-			"--prefix=${ED}/usr"
-			"--libdir=${ED}/usr/$(get_libdir)"
-			"--incdir=${ED}/usr/include"
-			"--cc=${mycc}"
-			"-C ac ${mycc}"
-			"-D c -DWALL"
-			"-F ac '${CFLAGS}'"
-			"-Ss pmake '\$(MAKE) ${MAKEOPTS}'"
-		)
-
-		# OpenMP shown to decreased performance over POSIX threads
-		# (at least in 3.9.x, see atlas-dev mailing list)
-		if use threads; then
-			myconf+=( "-t -1" "-Si omp 0" )
-		else
-			myconf+=( "-t  0" "-Si omp 0" )
-		fi
-
-		if use amd64 || use ppc64 || use sparc; then
-			if [ ${ABI} = amd64 ] || [ ${ABI} = ppc64 ] || [ ${ABI} = sparc64 ] ; then
-				myconf+=( "-b 64" )
-			elif [ ${ABI} = x86 ] || [ ${ABI} = ppc ] || [ ${ABI} = sparc32 ] ; then
-				myconf+=( "-b 32" )
-			else
-				myconf+=( "-b 64" )
-			fi
-		elif use ppc || use x86; then
-			myconf+=( "-b 32" )
-		elif use ia64; then
-			myconf+=( "-b 64" )
-		else #hppa alpha ...
-			myconf+=( "" )
-		fi
-		if use fortran; then
-			myconf+=(
-				"-C if $(tc-getFC)"
-				"-F if '${FFLAGS}'"
-			)
-			if use lapack; then
-				myconf+=(
-					"-Si latune 1"
-					"--with-netlib-lapack-tarfile=${DISTDIR}/${LAPACKP}"
-				)
-			else
-				myconf+=( "-Si latune 0" )
-			fi
-		else
-			myconf+=( "-Si latune 0" "--nof77" )
-		fi
-		local confdir="${S}_${1}"; shift
-		myconf+=( $@ )
-		mkdir "${confdir}" && cd "${confdir}"
-	# for debugging
-		echo ${myconf[@]} > myconf.out
-		"${S}"/configure ${myconf[@]} || die "configure in ${confdir} failed"
-	}
-
-	atlas_configure shared "-Fa alg -fPIC"
-	use static-libs && atlas_configure static
-}
-
-src_compile() {
-	atlas_compile() {
-		pushd "${S}_${1}" > /dev/null
-		# atlas does its own parallel builds
-		emake -j1 build
-		cd lib
-		emake libclapack.a
-		[[ -e libptcblas.a ]] && emake libptclapack.a
-		popd > /dev/null
-	}
-
-	atlas_compile shared
-	use static-libs && atlas_compile static
-}
-
-src_test() {
-	cd "${S}_shared"
-	emake -j1 check time
-}
-
-# transform a static archive into a shared library and install them
-# atlas_install_libs <mylib.a> [extra link flags]
-atlas_install_libs() {
-	local libname=$(basename ${1%.*})
-	einfo "Installing ${libname}"
-	local soname=${libname}.so.$(get_major_version)
-	shift
-	pushd "${S}_shared"/lib > /dev/null
-	${LINK:-$(tc-getCC)} ${LDFLAGS} -shared -Wl,-soname=${soname} \
-		-Wl,--whole-archive ${libname}.a -Wl,--no-whole-archive \
-		"$@" -o ${soname} || die "Creating ${soname} failed"
-	dolib.so ${soname}
-	ln -s ${soname} ${soname%.*}
-	dosym ${soname} /usr/$(get_libdir)/${soname%.*}
-	popd > /dev/null
-	use static-libs && dolib.a "${S}_static"/lib/${libname}.a
-}
-
-# create and install a pkgconfig file
-# atlas_install_pc <libname> <pkg name> [extra link flags]
-atlas_install_pc() {
-	local libname=${1} ; shift
-	local pcname=${1} ; shift
-	cat <<-EOF > ${pcname}.pc
-		prefix=${EPREFIX}/usr
-		libdir=\${prefix}/$(get_libdir)
-		includedir=\${prefix}/include
-		Name: ${pcname}
-		Description: ${PN} ${pcname}
-		Version: ${PV}
-		URL: ${HOMEPAGE}
-		Libs: -L\${libdir} -l${libname} $@
-		Cflags: -I\${includedir}/${PN}
-		${PCREQ}
-	EOF
-	insinto /usr/$(get_libdir)/pkgconfig
-	doins ${pcname}.pc
-}
-
-src_install() {
-	cd "${S}_shared/lib"
-	# rename to avoid collision with other packages
-	local l
-	for l in {,c}{blas,lapack}; do
-		if [[ -e lib${l}.a ]]; then
-			mv lib{,atl}${l}.a
-			use static-libs && mv "${S}"_static/lib/lib{,atl}${l}.a
-		fi
-	done
-
-	[[ -e libptcblas.a ]] && PTLIBS="-lpthread"
-
-	# atlas
-	atlas_install_libs libatlas.a -lm ${PTLIBS}
-
-	# cblas
-	atlas_install_libs libatlcblas.a -lm -L. -latlas
-	atlas_install_pc atlcblas atlas-cblas -lm -latlas
-	alternatives_for cblas atlas 0 \
-		/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas.pc \
-		/usr/include/cblas.h atlas/cblas.h
-
-	# cblas threaded
-	if [[ -e libptcblas.a ]]; then
-		atlas_install_libs libptcblas.a -lm -L. -latlas ${PTLIBS}
-		atlas_install_pc ptcblas atlas-cblas-threads -lm -latlas ${PTLIBS}
-		alternatives_for cblas atlas-threads 0 \
-			/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas-threads.pc \
-			/usr/include/cblas.h atlas/cblas.h
-	fi
-
-	if use lapack; then
-		PCREQ="Requires: cblas"
-		# clapack
-		atlas_install_libs libatlclapack.a -lm -L. -latlas -latlcblas
-		atlas_install_pc atlclapack atlas-clapack -lm -latlas
-
-		# clapack threaded
-		if [[ -e libptclapack.a ]]; then
-			atlas_install_libs libptclapack.a -lm -L. -latlas -lptcblas ${PTLIBS}
-			atlas_install_pc ptclapack atlas-clapack-threads -lm -latlas ${PTLIBS}
-		fi
-	fi
-
-	if use fortran; then
-		LINK=$(tc-getF77) PCREQ=
-		# blas
-		atlas_install_libs libf77blas.a -lm -L. -latlas
-		atlas_install_pc f77blas atlas-blas -lm -latlas
-		alternatives_for blas atlas 0 \
-			/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas.pc
-
-		# blas threaded
-		if [[ -e libptf77blas.a ]]; then
-			atlas_install_libs libptf77blas.a -lm -L. -latlas ${PTLIBS}
-			atlas_install_pc ptf77blas atlas-blas-threads -lm -latlas ${PTLIBS}
-			alternatives_for blas atlas-threads 0 \
-				/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas-threads.pc
-		fi
-
-		if use lapack; then
-			PCREQ="Requires: blas cblas"
-			# lapack
-			atlas_install_libs libatllapack.a \
-				-lm -L. -latlas -latlcblas -lf77blas
-			atlas_install_pc atllapack atlas-lapack -lm -latlas
-			alternatives_for lapack atlas 0 \
-				/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack.pc
-			# lapack threaded
-			if [[ -e libptlapack.a ]]; then
-				atlas_install_libs libptlapack.a \
-					-lm -L. -latlas -lptcblas -lptf77blas ${PTLIBS}
-				atlas_install_pc ptlapack atlas-lapack-threads \
-					-lm -latlas ${PTLIBS}
-				alternatives_for lapack atlas-threads 0 \
-					/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack-threads.pc
-			fi
-		fi
-	fi
-
-	cd "${S}"
-	insinto /usr/include/${PN}
-	doins include/*.h
-
-	cd "${S}/doc"
-	dodoc INDEX.txt AtlasCredits.txt ChangeLog
-	use doc && dodoc atlas*pdf cblas.pdf cblasqref.pdf
-	use doc && use fortran && dodoc f77blas*pdf
-	use doc && use fortran && use lapack && dodoc lapack*pdf
-}
diff --git a/sci-libs/atlas/atlas-3.9.77.ebuild b/sci-libs/atlas/atlas-3.9.79.ebuild
index 311fef252..311fef252 100644
--- a/sci-libs/atlas/atlas-3.9.77.ebuild
+++ b/sci-libs/atlas/atlas-3.9.79.ebuild