diff options
| -rw-r--r-- | dev-python/pyfaidx/Manifest | 1 | ||||
| -rw-r--r-- | dev-python/pyfaidx/metadata.xml (renamed from sci-biology/pyfaidx/metadata.xml) | 4 | ||||
| -rw-r--r-- | dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild | 25 | ||||
| -rw-r--r-- | profiles/updates/2Q-2024 | 1 | ||||
| -rw-r--r-- | sci-biology/pyfaidx/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild | 22 | ||||
| -rw-r--r-- | sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild | 24 |
7 files changed, 27 insertions, 52 deletions
diff --git a/dev-python/pyfaidx/Manifest b/dev-python/pyfaidx/Manifest new file mode 100644 index 000000000..c66bceba8 --- /dev/null +++ b/dev-python/pyfaidx/Manifest @@ -0,0 +1 @@ +DIST pyfaidx-0.8.1.1.tar.gz 103060 BLAKE2B 6910b77950a55885d1e0ae9f30172ec5c1d14320fdb2bad264e21d8f2e7f212f725f2608297ac5b6a2ec8d366b1385245694b2a70410deca8be1765db0683835 SHA512 26d130770069aed9bd378e54f338b6c66840114e6cddfdc971b6496fa30ee651181f2225d372499992b63ba8b0c6d0a7ed827a210dc3f78c0c8592bdb73211b3 diff --git a/sci-biology/pyfaidx/metadata.xml b/dev-python/pyfaidx/metadata.xml index 47cc39d79..b0e39cc41 100644 --- a/sci-biology/pyfaidx/metadata.xml +++ b/dev-python/pyfaidx/metadata.xml @@ -5,10 +5,6 @@ <email>mschu.dev@gmail.com</email> <name>Michael Schubert</name> </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> <upstream> <remote-id type="pypi">pyfaidx</remote-id> <remote-id type="github">mdshw5/pyfaidx</remote-id> diff --git a/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild b/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild new file mode 100644 index 000000000..86465aecd --- /dev/null +++ b/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..12} ) + +inherit distutils-r1 pypi + +DESCRIPTION="Efficient pythonic random access to fasta subsequences" +HOMEPAGE="https://github.com/mdshw5/pyfaidx" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +REPEND="dev-python/importlib_metadata[${PYTHON_USEDEP}]" + +EPYTEST_DESELECT=( + # needs external file + tests/test_Fasta_bgzip.py +) + +distutils_enable_tests pytest diff --git a/profiles/updates/2Q-2024 b/profiles/updates/2Q-2024 new file mode 100644 index 000000000..bf7fb5174 --- /dev/null +++ b/profiles/updates/2Q-2024 @@ -0,0 +1 @@ +move sci-biology/pyfaidx dev-python/pyfaidx diff --git a/sci-biology/pyfaidx/Manifest b/sci-biology/pyfaidx/Manifest deleted file mode 100644 index 0bb3b35f4..000000000 --- a/sci-biology/pyfaidx/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST pyfaidx-0.5.9.2.tar.gz 93438 BLAKE2B 3d3d225907f8bd04fdf4b20d608d02cd0e5a723f2a73df24b732992f139102e2a9042c37c5a73f762256fd007dd7e14bace910c0961e60870926c2ce1dca3ac3 SHA512 57b94421d6858fa2bd7b867b386d47d53d3afd75878b08e6e32fb7d8f4942f2a051e0123e6c4b4395abe656d639fa4f47afadbd8c4b2cbc001c5113cbbf96af4 -DIST pyfaidx-0.7.2.1.tar.gz 102951 BLAKE2B d8c76bb9f817a7f4a0f3aa58ef20344c1d5aa5e99a181f1171145264baab4603d772d7c37f8286654442ee0f6bf3b62f8d94d6e0495a65f54495e084403c0b92 SHA512 20833c2e11f942aa69b524170a0203ca4d035d058d1d8029c2fab50c4b60a4e947cbbdc0dc954e4ecdefbf07d095f861a86dbebdfdac4bdbecf65a691226e25c diff --git a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild deleted file mode 100644 index bec223f6c..000000000 --- a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild +++ /dev/null @@ -1,22 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) -DISTUTILS_USE_SETUPTOOLS=rdepend - -inherit distutils-r1 - -DESCRIPTION="Efficient pythonic random access to fasta subsequences" -HOMEPAGE="https://pypi.python.org/pypi/pyfaidx https://github.com/mdshw5/pyfaidx" -SRC_URI="https://github.com/mdshw5/pyfaidx/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -REPEND="dev-python/six[${PYTHON_USEDEP}]" - -#distutils_enable_tests nose diff --git a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild b/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild deleted file mode 100644 index 14f557869..000000000 --- a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild +++ /dev/null @@ -1,24 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) -DISTUTILS_USE_PEP517=setuptools - -inherit distutils-r1 pypi - -DESCRIPTION="Efficient pythonic random access to fasta subsequences" -HOMEPAGE="https://pypi.python.org/pypi/pyfaidx https://github.com/mdshw5/pyfaidx" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" -# Test issues reported upstream: -# https://github.com/mdshw5/pyfaidx/issues/208 -RESTRICT="test" - -REPEND="dev-python/six[${PYTHON_USEDEP}]" - -distutils_enable_tests pytest |