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* Second try to clean spaces in metadata.xmlJustin Lecher2017-11-1819-83/+83
* Consistently ident with tabsJustin Lecher2017-11-18323-2766/+2766
* sci-biology/bismark: Fix repoman warningsJustin Lecher2017-11-181-7/+8
* sci-biology/trf-bin: Fix repoman warningsJustin Lecher2017-11-181-3/+4
* sci-biology/trf: Fix repoman warningsJustin Lecher2017-11-181-5/+3
* sci-biology/tmhmm: Fix repoman warningsJustin Lecher2017-11-182-4/+7
* sci-biology/sequin: Fix repoman warningsJustin Lecher2017-11-181-4/+5
* sci-biology/repeatmasker: Fix repoman warningsJustin Lecher2017-11-181-7/+6
* sci-biology/fsl: Fix repoman warningsJustin Lecher2017-11-182-5/+5
* sci-biology/HTSeq: In main treeDavid Seifert2017-11-163-39/+0
* sci-biology/STAR: In main treeDavid Seifert2017-11-162-38/+0
* sci-biology/lastz: fix long-lasting ebuild errors and version bumpMartin Mokrejš2017-11-163-8/+27
* sci-biology/gbench: add missing SLOTMartin Mokrejš2017-11-161-1/+1
* sci-biology/gffutils: add missing DEPEND on dev-python/argcompleteMartin Mokrejš2017-11-161-1/+2
* sci-biology/gffutils: add missing DEPEND on dev-python/arghMartin Mokrejš2017-11-161-1/+2
* sci-biology/gffutils: add missing DEPEND on dev-python/simplejsonMartin Mokrejš2017-11-161-1/+3
* sci-biology/bamtools: Remove, everything in main treeDavid Seifert2017-11-024-93/+0
* sci-biology/fsl: version bump.Horea Christian2017-09-216-1/+732
* sci-biology/TransDecoder: Remove oldDavid Seifert2017-09-073-105/+0
* sci-biology/TransDecoder: Fix double-prefixDavid Seifert2017-09-072-41/+31
* sci-biology/pairagon: Fix double-prefixDavid Seifert2017-09-071-17/+20
* sci-biology/imagej: Do not call external programs in global scopeDavid Seifert2017-09-071-1/+1
* sci-biology/samtools: Remove oldDavid Seifert2017-09-0214-1041/+0
* sci-biology/bcftools: Remove oldDavid Seifert2017-09-025-105/+0
* sci-biology/pysam: Remove oldDavid Seifert2017-09-024-66/+0
* sci-biology/scbi_zcat: Update USE_RUBY to fix breakagesDavid Seifert2017-09-021-1/+1
* sci-biology/scbi_plot: Update USE_RUBY to fix breakagesDavid Seifert2017-09-021-1/+1
* sci-biology/scbi_mapreduce: Update USE_RUBY to fix breakagesDavid Seifert2017-09-021-1/+1
* sci-biology/scbi_fastq: Update USE_RUBY to fix breakagesDavid Seifert2017-09-021-1/+1
* sci-biology/scbi_fasta: Update USE_RUBY to fix breakagesDavid Seifert2017-09-021-1/+1
* sci-biology/scbi_blast: Update USE_RUBY to fix breakagesDavid Seifert2017-09-021-1/+1
* sci-biology/full_lengther_next: Update USE_RUBY to fix breakagesDavid Seifert2017-09-021-1/+1
* sci-biology/biopieces: Update USE_RUBY to fix breakagesDavid Seifert2017-09-022-4/+4
* sci-biology/bio-cd-hit-report: Update USE_RUBY to fix breakagesDavid Seifert2017-09-021-1/+1
* sci-biology/Atlas2: Update USE_RUBY to fix breakagesDavid Seifert2017-09-021-1/+1
* sci-biology/bwa: Latest in main treeDavid Seifert2017-09-024-75/+0
* sci-biology/bwa: version bumpMartin Mokrejš2017-07-314-0/+75
* sci-biology/ncbi-tools++: re-adding the patch with PCRE_LIBS addedMartin Mokrejš2017-07-281-4/+1
* sci-biology/ncbi-tools++: resolving my 'stash pop' with an empty changeMartin Mokrejš2017-07-281-1/+4
* sci-biology/libBigWig: remove old version with conflicting io.hMartin Mokrejš2017-07-282-26/+0
* sci-biology/libBigWig: version bumpMartin Mokrejš2017-07-282-0/+26
* sci-biology/nanopolish: new packageMartin Mokrejš2017-07-282-0/+60
* sci-biology/vcftools: the 0.1.15_pre release was just renamed to 0.1.15 by up...Martin Mokrejš2017-07-281-1/+1
* sci-biology/ruffus: pint EGIT_REPO_URI to the archive URL of code.google.comMartin Mokrejš2017-07-281-2/+2
* sci-biology/picard: version bumpMartin Mokrejš2017-07-282-2/+2
* sci-biology/khmer: added a comment how to proceed with src_compile()Martin Mokrejš2017-07-281-1/+3
* sci-biology/SPAdes: update comments on bundled dev-libs/boostMartin Mokrejš2017-07-281-1/+2
* sci-biology/MaSuRCA: add more URLs to HOMEPAGEMartin Mokrejš2017-07-281-2/+3
* sci-biology/libBigWig: new release with io.h renamed to bigWigIO.hMartin Mokrejš2017-07-283-4/+4
* sci-biology/samtools: version bumpMartin Mokrejš2017-07-282-1/+1