proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

4 files changed, 53 insertions, 0 deletions

diff --git a/sci-biology/biogrep/Manifest b/sci-biology/biogrep/Manifest
new file mode 100644
index 000000000000..0bd1b4ccfa7a
--- /dev/null
+++ b/sci-biology/biogrep/Manifest
@@ -0,0 +1 @@
+DIST biogrep-1.0.tar.gz 71867 RMD160 8f22aaa432febbf7d433402ca5da1afe7a98a217 SHA1 b4c24777e94d9f04dfda0d2d6a4599e3bc470a4f SHA256 15421d79f6f16d6bf9bef132a97f7f9ede1bd42d3fb90572df04a1e1abd8cfd8
diff --git a/sci-biology/biogrep/biogrep-1.0-r1.ebuild b/sci-biology/biogrep/biogrep-1.0-r1.ebuild
new file mode 100644
index 000000000000..f4af74c73bff
--- /dev/null
+++ b/sci-biology/biogrep/biogrep-1.0-r1.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="3"
+
+inherit toolchain-funcs
+
+DESCRIPTION="Multithreading application for matching large sets of patternsagainst biosequence dbs"
+HOMEPAGE="http://web.mit.edu/bamel/biogrep.shtml"
+SRC_URI="http://web.mit.edu/bamel/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+src_prepare() {
+	tc-export CC
+}
+
+src_install() {
+	emake prefix="${D}"/usr install || die "install failed"
+	dodoc AUTHORS ChangeLog NEWS README || die "dodoc failed"
+}
diff --git a/sci-biology/biogrep/biogrep-1.0.ebuild b/sci-biology/biogrep/biogrep-1.0.ebuild
new file mode 100644
index 000000000000..b2161dcaae5b
--- /dev/null
+++ b/sci-biology/biogrep/biogrep-1.0.ebuild
@@ -0,0 +1,18 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+DESCRIPTION="Multithreading application for matching large sets of patterns
+against biosequence dbs."
+HOMEPAGE="http://web.mit.edu/bamel/biogrep.shtml"
+SRC_URI="http://web.mit.edu/bamel/${P}.tar.gz"
+LICENSE="GPL-2"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+src_install() {
+	emake prefix="${D}"/usr install || die "install failed"
+	dodoc AUTHORS ChangeLog NEWS README || die "dodoc failed"
+}
diff --git a/sci-biology/biogrep/metadata.xml b/sci-biology/biogrep/metadata.xml
new file mode 100644
index 000000000000..173e3b48f53e
--- /dev/null
+++ b/sci-biology/biogrep/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+<maintainer>
+	<email>jlec@gentoo.org</email>
+</maintainer>
+</pkgmetadata>
+