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author | 2020-11-01 19:36:24 +0100 | |
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committer | 2020-11-01 19:36:24 +0100 | |
commit | c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b (patch) | |
tree | 286b98a7462614aedaf9131643130db4d5818006 /sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild | |
parent | sci-biology/lagan: Port to EAPI 7 (diff) | |
download | gentoo-c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b.tar.gz gentoo-c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b.tar.bz2 gentoo-c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b.zip |
sci-biology/clustalw-mpi: Port to EAPI 7
* Rename USE flags to avoid underscore
* Fix building against GCC 10 / -fno-common
Closes: https://bugs.gentoo.org/695122
Closes: https://bugs.gentoo.org/706960
Package-Manager: Portage-3.0.8, Repoman-3.0.2
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild')
-rw-r--r-- | sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild new file mode 100644 index 000000000000..334c34e78ce6 --- /dev/null +++ b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs + +DESCRIPTION="An MPI implemention of the ClustalW general purpose multiple alignment algorithm" +HOMEPAGE="http://www.bii.a-star.edu.sg/achievements/applications/clustalw/index.php" +SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz" + +LICENSE="public-domain" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="mpi-njtree static-pairalign" + +DEPEND="virtual/mpi" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}"/${P}-makefile.patch + "${FILESDIR}"/${P}-fno-common.patch +) + +src_prepare() { + default + + if use mpi-njtree; then + sed -e "s/TREES_FLAG/#TREES_FLAG/" -i Makefile || \ + die "Failed to configure MPI code for NJ trees" + fi + + if use static-pairalign; then + sed -e "s/DDYNAMIC_SCHEDULING/DSTATIC_SCHEDULING/" -i Makefile || \ + die "Failed to configure static scheduling for pair alignments" + fi +} + +src_install() { + dobin clustalw-mpi + newdoc README.clustalw-mpi README +} |