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authorDavid Seifert <soap@gentoo.org>2020-11-01 19:36:24 +0100
committerDavid Seifert <soap@gentoo.org>2020-11-01 19:36:24 +0100
commitc76141a9ed378795deac9e8fdd8f9ff5e6b1b91b (patch)
tree286b98a7462614aedaf9131643130db4d5818006 /sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild
parentsci-biology/lagan: Port to EAPI 7 (diff)
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sci-biology/clustalw-mpi: Port to EAPI 7
* Rename USE flags to avoid underscore * Fix building against GCC 10 / -fno-common Closes: https://bugs.gentoo.org/695122 Closes: https://bugs.gentoo.org/706960 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild')
-rw-r--r--sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild42
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diff --git a/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild
new file mode 100644
index 000000000000..334c34e78ce6
--- /dev/null
+++ b/sci-biology/clustalw-mpi/clustalw-mpi-0.13-r3.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit toolchain-funcs
+
+DESCRIPTION="An MPI implemention of the ClustalW general purpose multiple alignment algorithm"
+HOMEPAGE="http://www.bii.a-star.edu.sg/achievements/applications/clustalw/index.php"
+SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="mpi-njtree static-pairalign"
+
+DEPEND="virtual/mpi"
+RDEPEND="${DEPEND}"
+
+PATCHES=(
+ "${FILESDIR}"/${P}-makefile.patch
+ "${FILESDIR}"/${P}-fno-common.patch
+)
+
+src_prepare() {
+ default
+
+ if use mpi-njtree; then
+ sed -e "s/TREES_FLAG/#TREES_FLAG/" -i Makefile || \
+ die "Failed to configure MPI code for NJ trees"
+ fi
+
+ if use static-pairalign; then
+ sed -e "s/DDYNAMIC_SCHEDULING/DSTATIC_SCHEDULING/" -i Makefile || \
+ die "Failed to configure static scheduling for pair alignments"
+ fi
+}
+
+src_install() {
+ dobin clustalw-mpi
+ newdoc README.clustalw-mpi README
+}