proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

3 files changed, 84 insertions, 0 deletions

diff --git a/sci-chemistry/probe/files/2.12.110413-as-needed.patch b/sci-chemistry/probe/files/2.12.110413-as-needed.patch
new file mode 100644
index 000000000000..95368625505d
--- /dev/null
+++ b/sci-chemistry/probe/files/2.12.110413-as-needed.patch
@@ -0,0 +1,38 @@
+ Makefile |   13 ++++++-------
+ 1 files changed, 6 insertions(+), 7 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index e6a740e..8f74d6a 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,14 +1,12 @@
+-MACHINEFLAGS = 
+-CFLAGS = $(MACHINEFLAGS)
+-LFLAGS = -lm $(MACHINEFLAGS)
++LIBS = -lm
+ OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \
+-	 parse.o atomprops.o stdconntable.o autobondrot.o
++	 parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o
+ 
+ .c.o:
+-	cc -c $*.c $(CFLAGS)
++	$(CC) $(CFLAGS) -c $*.c
+ 
+ probe: probe.o $(OBJLIST)
+-	cc -o $@ probe.o $(OBJLIST) $(LFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ probe.o $(OBJLIST) $(LIBS)
+ 
+ clean:
+ 	@rm -f *.o *.ckp
+@@ -30,9 +28,10 @@ parse.o:	./parse.h	./utility.h	parse.c
+ probe.o:	./abin.h	./atomprops.h	./autobondrot.h	./dots.h	./geom3d.h \
+ 		./parse.h	./probe.h	./readPDBrecs.h	./select.h \
+ 		./stdconntable.h	./utility.h	probe.c
+-readPDBrecs.o:	./geom3d.h	./readPDBrecs.h	./utility.h	readPDBrecs.c
++readPDBrecs.o:	./geom3d.h	./readPDBrecs.h	./utility.h	./hybrid_36_c.h readPDBrecs.c
+ select.o:	./abin.h	./atomprops.h	./geom3d.h	./parse.h	./select.h \
+ 		./stdconntable.h	./utility.h	select.c
+ stdconntable.o:	./stdconntable.h	stdconntable.c
+ utility.o:	utility.c
++hybrid_36_c.o:  ./hybrid_36_c.h	hybrid_36_c.c
+ # DO NOT DELETE THIS 2nd LINE -- make depend uses it
diff --git a/sci-chemistry/probe/files/as-needed.patch b/sci-chemistry/probe/files/as-needed.patch
new file mode 100644
index 000000000000..9ddecf5f569e
--- /dev/null
+++ b/sci-chemistry/probe/files/as-needed.patch
@@ -0,0 +1,21 @@
+diff --git a/Makefile b/Makefile
+index 68d7469..bcb821c 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,6 +1,6 @@
+ MACHINEFLAGS = 
+ CFLAGS = $(MACHINEFLAGS)
+-LFLAGS = -lm $(MACHINEFLAGS)
++LFLAGS = -lm
+ OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \
+ 	 parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o
+ 
+@@ -8,7 +8,7 @@ OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \
+ 	cc -c $*.c $(CFLAGS)
+ 
+ probe: probe.o $(OBJLIST)
+-	cc -o $@ probe.o $(OBJLIST) $(LFLAGS)
++	cc $(MACHINEFLAGS) -o $@ probe.o $(OBJLIST) $(LFLAGS)
+ 
+ clean:
+ 	@rm -f *.o *.ckp
diff --git a/sci-chemistry/probe/files/probe-2.13.110909-as-needed.patch b/sci-chemistry/probe/files/probe-2.13.110909-as-needed.patch
new file mode 100644
index 000000000000..df7040c3ba1d
--- /dev/null
+++ b/sci-chemistry/probe/files/probe-2.13.110909-as-needed.patch
@@ -0,0 +1,25 @@
+ Makefile |    8 +++-----
+ 1 files changed, 3 insertions(+), 5 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index 9031bd0..8f74d6a 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,14 +1,12 @@
+-MACHINEFLAGS = 
+-CFLAGS = $(MACHINEFLAGS)
+-LFLAGS = -static -lm $(MACHINEFLAGS)
++LIBS = -lm
+ OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \
+ 	 parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o
+ 
+ .c.o:
+-	cc -c $*.c $(CFLAGS)
++	$(CC) $(CFLAGS) -c $*.c
+ 
+ probe: probe.o $(OBJLIST)
+-	cc -o $@ probe.o $(OBJLIST) $(LFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ probe.o $(OBJLIST) $(LIBS)
+ 
+ clean:
+ 	@rm -f *.o *.ckp