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Diffstat (limited to 'sci-biology/samtools/samtools-1.19.2.ebuild')
-rw-r--r--sci-biology/samtools/samtools-1.19.2.ebuild47
1 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/samtools/samtools-1.19.2.ebuild b/sci-biology/samtools/samtools-1.19.2.ebuild
new file mode 100644
index 000000000000..42879b0f8698
--- /dev/null
+++ b/sci-biology/samtools/samtools-1.19.2.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit toolchain-funcs
+
+DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
+HOMEPAGE="http://www.htslib.org/"
+SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+
+RDEPEND="
+ dev-lang/perl
+ =sci-libs/htslib-$(ver_cut 1-2)*:=
+ sys-libs/ncurses:=[unicode(+)]
+ sys-libs/zlib"
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
+
+src_prepare() {
+ default
+
+ # remove bundled htslib
+ rm -r htslib-* || die
+}
+
+src_configure() {
+ econf \
+ --with-ncurses \
+ --with-htslib=system \
+ CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)"
+}
+
+src_compile() {
+ emake AR="$(tc-getAR)"
+}
+
+src_install() {
+ default
+
+ dodoc -r examples
+ docompress -x /usr/share/doc/${PF}/examples
+}