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# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
DIST_AUTHOR=LDS
DIST_VERSION=1.43
inherit perl-module toolchain-funcs
DESCRIPTION="Read SAM/BAM database files"
SLOT="0"
KEYWORDS="~amd64 ~x86"
RDEPEND="
>=sci-biology/bioperl-1.6.9
sci-biology/samtools:0.1-legacy=
"
DEPEND="
dev-perl/Module-Build
sci-biology/samtools:0.1-legacy=
"
BDEPEND="${RDEPEND}
virtual/perl-ExtUtils-CBuilder
>=dev-perl/Module-Build-0.420.0
"
PATCHES=(
"${FILESDIR}"/${PN}-1.430.0-legacy-r1.patch
)
src_configure() {
tc-export CC
unset LD
if [[ -n "${CCLD}" ]]; then
export LD="${CCLD}"
fi
SAM_LIB="${EPREFIX}/usr/$(get_libdir)/libbam-0.1-legacy.so" \
SAM_INCLUDE="${EPREFIX}/usr/include/bam-0.1-legacy" \
perl-module_src_configure
}
src_compile() {
./Build --config optimize="${CFLAGS}" build || die
}
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