blob: 95d859b7898dd0a774ffe5cbfb346ae62cf358ad (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
|
# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit eutils prefix toolchain-funcs versionator
#MY_P="${PN}$(delete_all_version_separators)"
MY_P="${PN}${PV}"
DESCRIPTION="Protein Secondary Structure Prediction"
HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
SRC_URI="
http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz
test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )"
LICENSE="psipred"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="test"
RDEPEND="
app-shells/tcsh
sci-biology/ncbi-tools
|| ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )"
DEPEND=""
S="${WORKDIR}"/${PN}
src_prepare() {
rm -f bin/*
epatch \
"${FILESDIR}"/3.1-Makefile.patch \
"${FILESDIR}"/3.1-path.patch \
"${FILESDIR}"/3.2-fgets.patch
eprefixify runpsipred*
emake -C src clean
}
src_compile() {
emake -C src CC=$(tc-getCC)
}
src_install() {
emake -C src DESTDIR="${D}" install
dobin runpsipred* bin/* BLAST+/runpsipred*
insinto /usr/share/${PN}
doins -r data
dodoc README
}
pkg_postinst() {
elog "Please use the update_blastdb.pl in order to"
elog "maintain your own local blastdb"
}
|
GitWeb
