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# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit desktop toolchain-funcs
DESCRIPTION="A graphical multiple sequence alignment editor"
HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="+xft"
RDEPEND="
sci-biology/clustalw:2
sci-biology/phyml
|| (
sci-libs/libmuscle
sci-biology/muscle
)
sys-libs/zlib
x11-libs/fltk:1=[xft(+)?]
x11-libs/libX11
xft? ( x11-libs/libXft )"
DEPEND="${RDEPEND}"
BDEPEND="virtual/pkgconfig"
S="${WORKDIR}/${PN}"
PATCHES=(
"${FILESDIR}"/${PN}-4.6-fno-common.patch
"${FILESDIR}"/${PN}-4.6-Wreserved-user-defined-literal.patch
)
src_prepare() {
default
# respect CXXFLAGS (package uses them as CFLAGS)
sed \
-e "s:^CC.*:CC = $(tc-getCC):" \
-e "s:^CXX.*:CXX = $(tc-getCXX):" \
-e "s:\$(OPT):${CXXFLAGS}:" \
-e "s:^OPT:#OPT:" \
-e "s:^FLTK = .*$:FLTK = ${EPREFIX}/usr/include/fltk-1:" \
-e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cflags):" \
-e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \
-e "s:^USE_XFT:#USE_XFT:" \
-e "s:^#HELPFILE:HELPFILE:" \
-e "s:/usr/share/doc/seaview/seaview.htm:${EPREFIX}/usr/share/seaview/seaview.htm:" \
-e "s:^#PHYMLNAME:PHYMLNAME:" \
-e 's:-lXinerama::g' \
-e 's:-lpng::g' \
-e 's:-ljpeg::g' \
-e 's:-lfontconfig::g' \
-i Makefile || die "sed failed while editing Makefile"
if use xft; then
sed \
-e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $($(tc-getPKG_CONFIG) --cflags xft):" \
-e "s:-lXft:$($(tc-getPKG_CONFIG) --libs xft):" \
-i Makefile || die "sed failed while editing Makefile to enable xft"
else
sed -i -e "s:-lXft::" Makefile || die
fi
}
src_install() {
dobin seaview
# /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile
insinto /usr/share/seaview
doins example.nxs seaview.html
insinto /usr/share/seaview/images
doins seaview.xpm
make_desktop_entry seaview Seaview
doman seaview.1
}
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