New manual, added back pkg-config to DEPEND

Package-Manager: portage-2.1.9.42/cvs/Linux i686

3 files changed, 24 insertions, 26 deletions

diff --git a/sci-chemistry/gromacs/ChangeLog b/sci-chemistry/gromacs/ChangeLog
index 81792dee73a0..c4ecbfa896dc 100644
--- a/sci-chemistry/gromacs/ChangeLog
+++ b/sci-chemistry/gromacs/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-chemistry/gromacs
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.71 2011/03/21 16:24:52 alexxy Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.72 2011/03/22 18:10:25 ottxor Exp $
+
+  22 Mar 2011; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.4.ebuild:
+  New manual, added back pkg-config to DEPEND
 
 *gromacs-4.5.4 (21 Mar 2011)
 
diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest
index 75a5af2837d2..496032c6b33c 100644
--- a/sci-chemistry/gromacs/Manifest
+++ b/sci-chemistry/gromacs/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA1
 
 AUX gromacs-4.0.9999-docdir.patch 1352 RMD160 336ab23b4b65430caf3205650a8787e8e33d2137 SHA1 77e0cc966c4d755f603b2d0ab9a075c0ee6b7361 SHA256 8ead457b06f7f943455a95494be4648e539934699d29e955d2e05ac02f1ca4ef
 DIST ffamber_v4.0-doc.tar.gz 7915520 RMD160 aeadb18bd88bcd9e6fc45af22af15c51e32c66a3 SHA1 8d4969fa7eec660b41f769874be9698980b49ed0 SHA256 0b3395570dfe9bf808a297fcb120e1f525f38a91791fbafe6e444d542d7754aa
@@ -13,28 +13,23 @@ DIST gromacs-4.5.3_upstream20110217.patch.bz2 595080 RMD160 fb5b5f656018b6498051
 DIST gromacs-4.5.4.tar.gz 10353984 RMD160 96065d1a173231f75869764a08eb4feccc1ec597 SHA1 c7b3fbd2f3ddf915bc082e7effe76a8276563726 SHA256 301cc3d790f5036e230e02b1fb03c9b92e0db13df7ac6dbffb2a2fb03d7a1d1c
 DIST gromacs-manual-4.0.pdf 2135100 RMD160 b963642f8e1433f11328c3d0c4b1645c9de506da SHA1 8ae951ee15b2a7dc626331fce36511bc8766144c SHA256 646f810477eee2d710de6019c52056550413d0ba77baf9680195c835ddafe80a
 DIST gromacs-manual-4.5.3.pdf 2438528 RMD160 07f5ec0db1a773e77806c79554e5bb4fa8533dfd SHA1 7c81fc18e426d1090c485968d81957977ff10fc9 SHA256 6794fca3a2125918a03cd6bae3c031ab9b213c42a5f68a720c955b9107508717
+DIST gromacs-manual-4.5.4.pdf 2463242 RMD160 309a1d9bc5f4821076d53f668c36f1c6bfc1714f SHA1 58c0261308212af29fa0c4f4a6d1b81da6d84766 SHA256 dc14504a7072b61e7aa576c48f04df03356824f3a9d9e744dfaf51529ab46252
 EBUILD gromacs-4.0.7-r4.ebuild 9967 RMD160 168b3d2e5273634e710d45e293845ef6e97dd518 SHA1 4fb7f526ed22f2069e955317d8076f0446c3ca53 SHA256 b827418a2513499f9faaddac78450e1fc3245a9b392fd30692db179a1e130748
 EBUILD gromacs-4.0.7-r5.ebuild 9632 RMD160 9793eff619750d001a619bc90eccc977e6c0d12a SHA1 c98731aa5a9b5265839be712e35b1b73864b5ce7 SHA256 4b275be64d364867e4fb25dfc66c5405647f32b66cb2d7c453e0e471ee5d3eb9
 EBUILD gromacs-4.5.3-r3.ebuild 8076 RMD160 d25cab9b9d4c8c1044f7a8f7ea2d60013ee634a8 SHA1 9a57f25a332769c0beae388513e2211c93f65409 SHA256 23b5e142335b35def423d334fcac2ed9def829b47fd3b242a8352bc545bb2bf2
 EBUILD gromacs-4.5.3-r4.ebuild 8120 RMD160 4691e437da4478f07d63f16f3013e3034b21ff3a SHA1 cac2af2707f706aae2bc36b347d16476c2080944 SHA256 a71806cbb3e1824f820f80cfe7026c90b8b865f17b86507ead19c9a995f98106
 EBUILD gromacs-4.5.3.ebuild 7804 RMD160 79ac411bf838927697c419eaaf9d36ed698662e1 SHA1 176a781a35c1a568b106261723cf724a123824f2 SHA256 99174a1320e0b3334722aa1a3dcef7df92ae7a86912cbf027ebab1d8f10e177a
-EBUILD gromacs-4.5.4.ebuild 7896 RMD160 94b40c7fdf7a80babd6899eee37178411f7e162b SHA1 5556a5e1b51cdefc19ae2ccbea01600fd56167df SHA256 02f6637dcbb0ae9aa501f0f45f340ac37847bafc5ec16462a18c10308e6e5f84
-MISC ChangeLog 13570 RMD160 ef3b19291752dd0573b6f12f121c97cdeb302609 SHA1 a860128ff701c451f7cbfde7018263a9e309a29b SHA256 4fe2f8fd4dbc872079e8716773f53a27ce7a33e66578c43c1aad71f5cf2cfa61
+EBUILD gromacs-4.5.4.ebuild 7937 RMD160 501ca2752460ca08cbd8a9cd676d7e6513ab8123 SHA1 aa9f11dd41a5d6ce6e5a562a873b922ebb309aa7 SHA256 21656232ac5a5e57f3d4865689033aa24a593ec945fd4342b05b575b28f1e48d
+MISC ChangeLog 13693 RMD160 a79c2c00c4ba9f801513ff49d3fccfdf8eb0bd09 SHA1 c933055f6ee3c1706b88e47b8be61d261afdc478 SHA256 1dfbd6e3d726b0ec5eb9057dd3a952c93f2bcc89216ab356c8638b2e86c55213
 MISC metadata.xml 576 RMD160 376a5b9f0b65c82cfe2cb0f3d7fe81b593932fa2 SHA1 5c4da5764221ae19041b8a3665ea2205c71598c6 SHA256 a08022560f16532545db516b50a9f84c112b34e5ae406a778bdaef5046e226fd
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.17 (GNU/Linux)
 
-iQIcBAEBCAAGBQJNh3vfAAoJEOf+E+/4L5Lmeb8P/1HtYSHFjLLg5XOWkPu9zdU6
-akzdcEItwhmORpeebcBvZfG+u87KwmsLOVp9TJrcP1OJFStfGb1SZXzOV6qjYBlL
-Yjk1oJClGO57EK2vsgFhMqPCfsWIGgXgUqityQzn14hnRfAdncDFilJVW4AGULCA
-LzFG3Ki32VrYO2c8ftWVX5EW5FW+Y/iTnazH/+ZLpt1jtFmEuBYVdJ9fbmQyfWxa
-dW7RuxfiTNr8YpJTj2mMVWrwUaIQxFQEKeDkVvhsRsge73uz0yVkLx1QXR5Fwngc
-/SLhVAqP1J2bjbFhzi5tvvSOqZeX7Ee54670+Rs93YFXB2hdfqIaT5oYA2OEUdSh
-+ixr8DFsnMkqsSxzBmhY/4ZBnH0RZzDz8dwseGAvkEnTDr663hi1j3Wns9GCk8be
-ubWL424s+qTgce93KofPFHxq3q/fx8ljEIExezi7iFOIgYo+qa+ZAMH3Wulzz5y+
-PUNi/fFUL9cqeTJRzOFP6GyruAbePdBhNIoNX+37V5LcQt3/FAEsVHfNKO3B1X+k
-B5HxFVxqdmY0hlpS6dK3MiAhJt15dZvixGkNeu9FXHYH5R03fq2qZ7PA05EYPyH7
-c0+c4/4zV7UGTjWn9ddeYOh152vuv2Y2Ge/GfXpBFTiAYXmsNfPERR+SCI/zEoBO
-GwzOCV9c9VYMWG5FATo6
-=Fx18
+iQEcBAEBAgAGBQJNiOi/AAoJEOeBhlrCAAWGIwMH/igyJeiHvCkrjxyKnfCdqbMS
+m73t/1faOTlRyQC0wDtISezooXudXNK/GmupHkPOuN0NnPgwAzDc6m47J+tp5C9q
+FuXe+QEym7Bs4wR/1O/WjASUW4A3X0g3D6xCCEyz78AZKm/QSUMYw+Bkm0LO2ywJ
+OKCdjw947eKzHahxZgZrspeJcv6HfTpv9tlagauiC9fDLivWkzrPVt06Ev6QxWUe
+hvamASfX2K23aP+cRWIR/1USPaqKLwaN/v7aKCWYBvZsU9eyGqiZKU4syCQV6g4p
+xv/GpBI3qXrvc3rsUkGBu8GyxxH5d+fyAKelfaoIMnx3IdFQRJyx5mmh2KyYtUk=
+=4Ay4
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/gromacs/gromacs-4.5.4.ebuild b/sci-chemistry/gromacs/gromacs-4.5.4.ebuild
index 73c92ec3e695..1fff4be8c1a3 100644
--- a/sci-chemistry/gromacs/gromacs-4.5.4.ebuild
+++ b/sci-chemistry/gromacs/gromacs-4.5.4.ebuild
@@ -1,18 +1,17 @@
 # Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4.ebuild,v 1.1 2011/03/21 16:24:52 alexxy Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.4.ebuild,v 1.2 2011/03/22 18:10:25 ottxor Exp $
 
 EAPI="3"
 
 LIBTOOLIZE="true"
 TEST_PV="4.0.4"
-MANUAL_PV="4.5.3"
+MANUAL_PV="4.5.4"
 
 inherit autotools-utils bash-completion flag-o-matic multilib toolchain-funcs
 
 SRC_URI="test? ( ftp://ftp.gromacs.org/pub/tests/gmxtest-${TEST_PV}.tgz )
-		doc? (
-		http://www.gromacs.org/@api/deki/files/133/=manual-${MANUAL_PV}.pdf -> gromacs-manual-${MANUAL_PV}.pdf )"
+		doc? ( ftp://ftp.gromacs.org/pub/manual/manual-${MANUAL_PV}.pdf -> gromacs-manual-${MANUAL_PV}.pdf )"
 
 if [ "${PV%9999}" != "${PV}" ]; then
 	EGIT_REPO_URI="git://git.gromacs.org/gromacs"
@@ -31,8 +30,7 @@ KEYWORDS="~alpha ~amd64 ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux"
 IUSE="X altivec blas dmalloc doc -double-precision +fftw fkernels +gsl lapack
 mpi +single-precision sse sse2 static-libs test +threads +xml zsh-completion"
 
-DEPEND="
-	app-shells/tcsh
+CDEPEND="
 	X? ( x11-libs/libX11
 		x11-libs/libSM
 		x11-libs/libICE )
@@ -43,8 +41,10 @@ DEPEND="
 	lapack? ( virtual/lapack )
 	mpi? ( virtual/mpi )
 	xml? ( dev-libs/libxml2:2 )"
-
-RDEPEND="${DEPEND}"
+DEPEND="${CDEPEND}
+	dev-util/pkgconfig"
+RDEPEND="${CDEPEND}
+	app-shells/tcsh"
 
 RESTRICT="test"
 
@@ -128,7 +128,7 @@ src_configure() {
 	local sseflag="x86-64-sse"
 	use x86 && sseflag="ia32-sse"
 
-	#a bug in gromacs autotools
+	#missing flag in autotools (bug #339837)
 	use sse && append-flags -msse
 	use sse2 && append-flags -msse2