initial import of rjava interface package

Package-Manager: portage-2.1.3.9

5 files changed, 189 insertions, 0 deletions

diff --git a/dev-java/rjava/ChangeLog b/dev-java/rjava/ChangeLog
new file mode 100644
index 000000000000..4858c659b20d
--- /dev/null
+++ b/dev-java/rjava/ChangeLog
@@ -0,0 +1,12 @@
+# ChangeLog for dev-java/rjava
+# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-java/rjava/ChangeLog,v 1.1 2007/10/01 04:42:43 nerdboy Exp $
+
+*rjava-0.5.1 (01 Oct 2007)
+
+  01 Oct 2007; Steve Arnold <nerdboy@gentoo.org> +metadata.xml,
+  +rjava-0.5.1.ebuild:
+  Initial import of rjava, the Java-R interface.  Note that building an R
+  package in portage is a little weird, but works.  Recommend all external
+  R packages (if any) be installed under site-library.
+
diff --git a/dev-java/rjava/Manifest b/dev-java/rjava/Manifest
new file mode 100644
index 000000000000..421f3fb4018e
--- /dev/null
+++ b/dev-java/rjava/Manifest
@@ -0,0 +1,16 @@
+DIST rJava_0.5-1.tar.gz 226783 RMD160 354f7752a547b0ac24cf535c3e09579b266cc6c9 SHA1 22c8a068cda394b72216309a7e0a0c51757517ad SHA256 dc46959b52b9014d05d2f7ce101984124c0cb51190adfb4b65454846a0914c59
+EBUILD rjava-0.5.1.ebuild 3806 RMD160 73b42cde50cfce7756578012f21c54d45c5ab6e0 SHA1 d43891d360bc08966ad71aa73ca9257e85448479 SHA256 c3d256b168e7be0b6585128949341b80b996a28dcfc7b4da2e26838dc39d4a12
+MD5 11ede5b10fc14f69921c97e63fc70be3 rjava-0.5.1.ebuild 3806
+RMD160 73b42cde50cfce7756578012f21c54d45c5ab6e0 rjava-0.5.1.ebuild 3806
+SHA256 c3d256b168e7be0b6585128949341b80b996a28dcfc7b4da2e26838dc39d4a12 rjava-0.5.1.ebuild 3806
+MISC ChangeLog 522 RMD160 0e57ea5509ac66dc3db92970c475a0cc1db742b1 SHA1 9d0a2fee90cd0c92dce7914b2421ab8aadc922e9 SHA256 425936e8149380bdf2332675a04b80ded48f5934a6a25647109b0ecab0738421
+MD5 90589f3301f325ad2ff03df5fce87894 ChangeLog 522
+RMD160 0e57ea5509ac66dc3db92970c475a0cc1db742b1 ChangeLog 522
+SHA256 425936e8149380bdf2332675a04b80ded48f5934a6a25647109b0ecab0738421 ChangeLog 522
+MISC metadata.xml 608 RMD160 98a89fdf94e409c22893cc19e3700c8330d57688 SHA1 b0d1e7475373d57d0c7a96c327fbaf7eeea8d40f SHA256 73860a49b7c97e5788449dee0a53688a5235bb364a7b42a7a104231e549890ff
+MD5 7120e86887170ba111d0f0fdd60b239f metadata.xml 608
+RMD160 98a89fdf94e409c22893cc19e3700c8330d57688 metadata.xml 608
+SHA256 73860a49b7c97e5788449dee0a53688a5235bb364a7b42a7a104231e549890ff metadata.xml 608
+MD5 22f6f75fc026682cde73a5efb0ee9ae1 files/digest-rjava-0.5.1 235
+RMD160 385400eae70f981ed2a008818346961a5eaf5563 files/digest-rjava-0.5.1 235
+SHA256 5896d4934d29d4b62934e20c37a8510d9dc2a49bd902f92c76229aee884d2ead files/digest-rjava-0.5.1 235
diff --git a/dev-java/rjava/files/digest-rjava-0.5.1 b/dev-java/rjava/files/digest-rjava-0.5.1
new file mode 100644
index 000000000000..c277865141f1
--- /dev/null
+++ b/dev-java/rjava/files/digest-rjava-0.5.1
@@ -0,0 +1,3 @@
+MD5 49cb1da46d3be3bd115dcdfca698af05 rJava_0.5-1.tar.gz 226783
+RMD160 354f7752a547b0ac24cf535c3e09579b266cc6c9 rJava_0.5-1.tar.gz 226783
+SHA256 dc46959b52b9014d05d2f7ce101984124c0cb51190adfb4b65454846a0914c59 rJava_0.5-1.tar.gz 226783
diff --git a/dev-java/rjava/metadata.xml b/dev-java/rjava/metadata.xml
new file mode 100644
index 000000000000..1b4f63ba0d6d
--- /dev/null
+++ b/dev-java/rjava/metadata.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription lang="en">
+rJava is a simple R-to-Java interface. It is comparable to the .C/.Call C 
+interface. rJava provides a low-level bridge between R and Java (via JNI). 
+In a sense the inverse of rJava is JRI (Java/R Interface) which provides 
+the opposite direction - calling R from Java. JRI is now shipped as a part 
+of the rJava package, although it still can be used as a separate entity 
+(especially for development).
+</longdescription>
+</pkgmetadata>
diff --git a/dev-java/rjava/rjava-0.5.1.ebuild b/dev-java/rjava/rjava-0.5.1.ebuild
new file mode 100644
index 000000000000..76d5b3bbca4d
--- /dev/null
+++ b/dev-java/rjava/rjava-0.5.1.ebuild
@@ -0,0 +1,145 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/dev-java/rjava/rjava-0.5.1.ebuild,v 1.1 2007/10/01 04:42:43 nerdboy Exp $
+
+JAVA_PKG_IUSE="examples"
+
+inherit eutils java-pkg-2 versionator
+
+MY_PN=rJava
+MY_PV=$(replace_version_separator 2 '-' )
+MY_P=${MY_PN}_${MY_PV}
+S=${WORKDIR}/${MY_PN}
+
+DESCRIPTION="The current rJava interface (also includes JRI)"
+HOMEPAGE="http://www.rforge.net/rJava/"
+SRC_URI="http://www.rforge.net/${MY_PN}/snapshot/${MY_P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~x86"
+IUSE=""
+
+COMMON_DEP=">=dev-lang/R-2.5.0"
+
+RDEPEND=">=virtual/jre-1.5
+	${COMMON_DEP}"
+
+DEPEND=">=virtual/jdk-1.5
+	${COMMON_DEP}"
+
+pkg_setup() {
+	java-pkg-2_pkg_setup
+
+	if use x86; then
+	    jvmarch=i386
+	else
+	    jvmarch=${ARCH}
+	fi
+}
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	setup-jvm-opts
+}
+
+src_compile() {
+	export R_HOME="/usr/$(get_libdir)/R"
+
+	# use R's check command to test package (really needs to come before
+	# the src_compile section)
+	if has test ${FEATURES}; then
+	    cd ${WORKDIR}
+	    R CMD check ${MY_PN}
+	fi
+
+	cd "${S}"
+	local my_conf="--enable-jri"
+	econf ${my_conf} || die "econf failed"
+	cd src/
+	make -f Makevars all || die "make failed"
+}
+
+src_install() {
+	export R_LIBS_SITE="${R_HOME}/site-library"
+	keepdir ${R_LIBS_SITE}
+	cd ${WORKDIR}
+	R CMD INSTALL --no-configure -l "${D}${R_LIBS_SITE}" ${MY_PN} \
+	    || die "install failed"
+	cd ${S}
+
+	local jri_dir="/usr/$(get_libdir)/jri"
+	java-pkg_jarinto ${jri_dir}
+	java-pkg_dojar inst/jri/JRI.jar
+
+	insinto ${jri_dir}
+	insopts -m0755
+	doins inst/jri/libjri.so
+	java-pkg_regso "${D}${jri_dir}/libjri.so"
+
+	echo "R_HOME=${R_HOME}">25rjava
+	echo "LD_LIBRARY_PATH=${R_HOME}/lib:${JAVA_LIB_DIR}">>25rjava
+	echo "R_INCLUDE_DIR=${R_HOME}/include">>25rjava
+	echo "R_SHARE_DIR=${R_HOME}/share">>25rjava
+	echo "R_DOC_DIR=${R_HOME}/doc">>25rjava
+
+	insopts -m0644
+	doenvd 25rjava
+
+	dodoc NEWS
+	newdoc jri/README README.jri
+	use examples && java-pkg_doexamples jri/examples
+}
+
+setup-jvm-opts() {
+	# Figure out correct boot classpath
+	# stolen from eclipse-sdk ebuild
+	local bp="$(java-config --jdk-home)/jre/lib"
+	local bootclasspath=$(java-config --runtime)
+	if [[ ! -z "`java-config --java-version | grep IBM`" ]] ; then
+		# IBM JDK
+		JAVA_LIB_DIR="$(java-config --jdk-home)/jre/bin"
+	else
+		# Sun derived JDKs (Blackdown, Sun)
+		JAVA_LIB_DIR="$(java-config --jdk-home)/jre/lib/${jvmarch}"
+	fi
+
+	einfo "Using bootclasspath ${bootclasspath}"
+	einfo "Using JVM library path ${JAVA_LIB_DIR}"
+
+	if [[ ! -f ${JAVA_LIB_DIR}/libawt.so ]] ; then
+		die "Could not find libawt.so native library"
+	fi
+
+	export AWT_LIB_PATH=${JAVA_LIB_DIR}
+}
+
+pkg_postinst () {
+	elog
+	elog "The rJava package also includes the JRI tools, so rJava now"
+	elog "provides both sides of the overall interface.  The rJava piece"
+	elog "is installed as an R package, while JRI is composed of the .jar"
+	elog "file and libjri.so, which are registered with the Java packaging"
+	elog "tools."
+	elog
+	elog "Some documentation on JRI can be found in the usual place,"
+	elog "along with the internal R docs in various formats."
+	elog
+	elog "Note: JRI is also installed under the R site-library dir."
+	elog "(see the 'run' script installed with the R package for one"
+	elog "way to run the JRI examples, however, the environment setup"
+	elog "should be taken care of by the java eclass functions and the"
+	elog "env.d file installed by the ebuild)."
+	elog
+	elog "http://www.rforge.net/rJava/index.html"
+	elog "The above URL is the correct home page for the current rJava release."
+	elog "The sourceforge page called RJava is old and no longer maintained."
+	elog
+
+	ewarn "Please perform"
+	ewarn "  env-update"
+	ewarn "  source /etc/profile"
+	ewarn "prior to using JRI."
+	elog
+}