Disable webapp autoslotting, bug 396085

Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64

1 files changed, 72 insertions, 0 deletions

diff --git a/sci-biology/GBrowse/GBrowse-2.44-r1.ebuild b/sci-biology/GBrowse/GBrowse-2.44-r1.ebuild
new file mode 100644
index 000000000000..b6844df7a6a0
--- /dev/null
+++ b/sci-biology/GBrowse/GBrowse-2.44-r1.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/GBrowse-2.44-r1.ebuild,v 1.1 2012/01/02 21:19:46 weaver Exp $
+
+EAPI=4
+
+MODULE_AUTHOR=LDS
+inherit perl-module webapp
+
+DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser"
+HOMEPAGE="http://gmod.org/wiki/GBrowse"
+KEYWORDS="~amd64 ~x86"
+IUSE="-minimal mysql postgres +sqlite"
+
+SLOT="0"
+WEBAPP_MANUAL_SLOT="yes"
+
+CDEPEND="!<sci-biology/GBrowse-2.44-r1
+	>=sci-biology/bioperl-1.6.9
+	>=dev-perl/Bio-Graphics-2.09
+	>=dev-perl/GD-2.07
+	>=dev-perl/CGI-Session-4.02
+	dev-perl/IO-String
+	dev-perl/JSON
+	dev-perl/libwww-perl
+	dev-perl/Statistics-Descriptive
+	!minimal? (
+		dev-perl/Bio-Das
+		>=dev-perl/Bio-SamTools-1.20
+		dev-perl/Crypt-SSLeay
+		dev-perl/DB_File-Lock
+		dev-perl/DBI
+		mysql? ( dev-perl/DBD-mysql )
+		postgres? ( dev-perl/DBD-Pg )
+		sqlite? ( dev-perl/DBD-SQLite )
+		dev-perl/FCGI
+		dev-perl/File-NFSLock
+		dev-perl/GD-SVG
+		dev-perl/Net-OpenID-Consumer
+		dev-perl/Net-SMTP-SSL
+	)"
+#		>=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile
+DEPEND="virtual/perl-Module-Build
+	dev-perl/Capture-Tiny
+	${CDEPEND}"
+RDEPEND="${CDEPEND}"
+
+PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch )
+
+src_configure() {
+	webapp_src_preinst
+
+#	myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse"
+	myconf="--conf=/etc/gbrowse2"
+	myconf="${myconf} --htdocs=${MY_HTDOCSDIR}"
+	myconf="${myconf} --cgibin=${MY_CGIBINDIR}"
+	myconf="${myconf} --tmp=/var/tmp/gbrowse2"
+	myconf="${myconf} --persistent=/var/db/gbrowse2"
+	myconf="${myconf} --databases=/var/db/gbrowse2/databases"
+	myconf="${myconf} --installconf=no"
+	myconf="${myconf} --installetc=no"
+	perl-module_src_configure
+}
+
+src_install() {
+	dodir /var/tmp/gbrowse2
+	dodir /var/db/gbrowse2/sessions
+	dodir /var/db/gbrowse2/userdata
+	webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2
+	perl-module_src_install
+	webapp_src_install
+}