diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-10-19 03:55:31 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-10-19 03:55:31 +0000 |
| commit | 42bfd4f8ef71a6d4803b8beab78cf3d859c546fb (patch) | |
| tree | 55229996bce9f410f64460352d22fe8187103ba1 /sci-biology/beast-mcmc | |
| parent | version bump and synced with live ebuild. (diff) | |
| download | historical-42bfd4f8ef71a6d4803b8beab78cf3d859c546fb.tar.gz historical-42bfd4f8ef71a6d4803b8beab78cf3d859c546fb.tar.bz2 historical-42bfd4f8ef71a6d4803b8beab78cf3d859c546fb.zip | |
Address upstream changes in live ebuild
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/beast-mcmc')
| -rw-r--r-- | sci-biology/beast-mcmc/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/beast-mcmc/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/beast-mcmc/beast-mcmc-9999.ebuild | 8 |
3 files changed, 10 insertions, 7 deletions
diff --git a/sci-biology/beast-mcmc/ChangeLog b/sci-biology/beast-mcmc/ChangeLog index 7b23dc7a04bf..7fd908964e7a 100644 --- a/sci-biology/beast-mcmc/ChangeLog +++ b/sci-biology/beast-mcmc/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/beast-mcmc # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/ChangeLog,v 1.1 2009/10/02 21:47:11 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/ChangeLog,v 1.2 2009/10/19 03:55:31 weaver Exp $ + + 18 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> beast-mcmc-9999.ebuild: + Address upstream changes in live ebuild *beast-mcmc-9999 (02 Oct 2009) *beast-mcmc-1.5.1 (02 Oct 2009) diff --git a/sci-biology/beast-mcmc/Manifest b/sci-biology/beast-mcmc/Manifest index 07f505cf123f..466f081948b6 100644 --- a/sci-biology/beast-mcmc/Manifest +++ b/sci-biology/beast-mcmc/Manifest @@ -1,5 +1,5 @@ DIST beast-mcmc-1.5.1.tar.bz2 32191300 RMD160 c9e9b5e5283e537a61c8656a093cb267dd2533dc SHA1 7750af1dcbfe65c949aabf5390ca36a6f45b3013 SHA256 f64bc0e6be372ef4ed7e3e287c99e5b9da2f7d961cd1c7eca9483ae70ab3ba5b EBUILD beast-mcmc-1.5.1.ebuild 2917 RMD160 54c28423917fde18e23a78309aa4efcd55c9039c SHA1 575f4d65ab003d0700e76082fbab90aa393ed393 SHA256 106b6f5e544b9faf284082c5eba261097d29e0782c826218fa1dee398fb81126 -EBUILD beast-mcmc-9999.ebuild 2867 RMD160 283b085590f4411076ba1907abbe6439a34ca280 SHA1 22dd641f3f07190708a343723cdab0da79e0e8a5 SHA256 f78c9fd53a1f41d68f5d45b25cc33d5f5e77d434289204d9798e800031c4731b -MISC ChangeLog 442 RMD160 c4114950115bdbd7e4f7d0ea49e2f0128e231f12 SHA1 e08f87c0d27b88da7c5cc776c08beacad30ed819 SHA256 e05763bb2fbd8e9cd1d4fb21af7642efa5f4c5f3691fe3311ce18749797dd895 +EBUILD beast-mcmc-9999.ebuild 2869 RMD160 d00e3cb3826dce6ae8b1ed3db890597e0eec9249 SHA1 1555bb80c11a071d41af58e2bf4288422d6652c9 SHA256 ef97822c25a76d3ebd0e8902d6dc8960c6a2b1d258d83a6449889cb5d022a87e +MISC ChangeLog 559 RMD160 cc8ae2c7c070e4ad6923ffa956e585c5c79a74cc SHA1 b1b6604215f06966e55ac6ee71c28c99e82457e4 SHA256 55191d7a85eee3ce65529dbb0b3a899827d8adbd5372433d33fee2ea7082baaf MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild index 098b991c00ee..da4afd080a8f 100644 --- a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild +++ b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild @@ -1,13 +1,13 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild,v 1.1 2009/10/02 21:47:11 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild,v 1.2 2009/10/19 03:55:31 weaver Exp $ EAPI="2" ESVN_REPO_URI="http://beast-mcmc.googlecode.com/svn/trunk/" WANT_ANT_TASKS="ant-junit4" -EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-1,jdom-jaxen-1.0" +EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0" JAVA_ANT_REWRITE_CLASSPATH="true" JAVA_ANT_ENCODING="latin1" JAVA_PKG_BSFIX_NAME="build.xml build_BEAST_MCMC.xml build_coalsim.xml build_development.xml build_pathogen.xml build_release.xml build_treestat.xml build_vcs.xml" @@ -31,7 +31,7 @@ COMMON_DEPS="dev-java/colt:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java - dev-java/commons-math:1 + dev-java/commons-math:2 dev-java/jdom-jaxen:1.0" DEPEND=">=virtual/jdk-1.5 ${COMMON_DEPS}" @@ -61,7 +61,7 @@ src_compile() { } src_install() { - java-pkg_dojar bin/dist/*.jar dist/*.jar + java-pkg_dojar build/dist/*.jar dist/*.jar java-pkg_dolauncher beauti --jar beauti.jar --java_args '-Xms64m -Xmx256m' # java-pkg_dolauncher beauti --main dr.app.beauti.BeautiApp --java_args '-Xms64m -Xmx256m' |